extensions

Tripal Advisory Committee Meeting 2021/5/04	Tripal Community Meeting Notes	Agenda White paper came back with only minor revisions! Yea! Stephen is spearheading a new grant NSF SABI (https://www.nsf.gov/pubs/2021/nsf21503/nsf21503.htm) specifically funds ongoing efforts rather than new functionality help support our efforts to upgrade Tripal and all our Extension modules to Drupal 8/9. Need help from everyone to show research and education impact Training - grad students,postdocs, undergrads Publications Site Usage Can an outreach and training person be supported by this? Sustainability is part of the grant, so likely will fit How can we increase involvement of developers in core development? And also increase the involvement of community members? Why are we losing interested groups? How do we get people who are working on overlapping projects to work together? More organized outreach, more frequent hackathons Find top 3-4 modules that everyone needs, then focus the community on those with once a month hackathons, make it fun and interactive and make these modules really awesome and fit everyone's needs Weekly coding get together falls into this - this is not for developers only! Inclusive for anyone in the community Perhaps be more targeted - set aside part of dev meeting for a specific issue - Might need separate meetings timed around everyone’s schedule but this is extra overhead Asynchronous code fest where each person works independently? More flexible but missing the good discussion recording our meetings and get it searchable maybe on YouTube platform or vimeo with comments enables, can get training material out there Advocacy for Tripal is important to get new groups and keep enthusiasm going Could we set up a google form for presentations and trainings? Auto display on website? Could part of the problem be that initiatives/projects undertaken by a single group generally don't get collaborators after the fact? Place more emphasis on linking groups together before project development starts Get groups to share a DB - a group can develop a new module they need but have it installed on an existing database Stephen - will make “Before you start” guide to user docs to help people find what they need Fill out a form about new modules w/ design spec Also put out over slack and twitter for feedback Newsletter? Once a quarter? Solicit items through a form Start using CoFest Support for more community standards: Alliance for genome resources APIs. Presenting more at ISMB/BOSC. Perhaps we should start BOSC abstracts due in 2 days Bioinfo core at ISMB https://docs.google.com/forms/d/e/1FAIpQLScYBLNNFOtD62LaAUj2_WUzdyIcc
Tripal at the Plant and Animal Genome XXIV Conference	Article	Tripal Codefest - January 8, 2016 Codefest Developers and users of Tripal met on January 8, 2016 to discuss current and future directions for Tripal modules and Tripal extension modules. For full proceedings and a list of attendees see the associated Google document. Topics Discussed ElasticSearch Tripal3 Chado Export of Data NoSQL Forums on Tripal.info Expression Data Comparative Map (CMap but more Tripal-y) Tripal.info Bulk Loader Shopping Cart Attendees Ethy Cannon (Iowa State) Ming Chen (University of Tennessee, Knoxville) Connor Wytko (Washington State University) Brian Soto (Washington State University) Katheryn Buble (Washington State University) Emily Grau (University of Connecticut) Valentin Guignon (Biodiversity International) Nate Henry (University of Tennessee, Knoxville) Sook Jung (Washington State University) Rob Moseley (University of Tennessee, Knoxville) Lacey-Anne Sanderson (University of Saskatchewan) Meg Staton (University of Tennessee, Knoxville) Jill Wegrzyn (University of Connecticut) Pooja Umale (National Center for Genome Resources, Santa Fe, NM) Jacqueline D. Campbell (Iowa State University) Taein Lee (Washington State University) Sudhansu Dash (National Center for Genome Resources, Santa Fe, NM) Gerard Lazo (USDA-ARS, Albany, CA) Tripal Database Network and Initiatives - January 10, 2016 A Tripal workshop was hosted at the Plant and Animal Genome XXIV Conference. Talks were given by Tripal core developers, extension developers, and website administrators. Organizers Lacey-Anne Sanderson - University of Saskatechewan Margaret Staton - University of Tennessee Talks Tripal v2: An Overview (abstract) Speaker: Lacey-Anne Sanderson Presentation The Future of Tripal: intuitive content creation, flexible data storage and web services (abstract) Speaker: Stephen P. Ficklin Presentation Overview of NRSP and Planned Tripal development (abstract) Speaker: Dorrie Main Extending Tripal to Manage Banana Genetic Resource Information (abstract) Speaker: Valentin Guignon Presentation Efforts by the Hardwood Genomics Database team to extend Tripal functionality (abstract) Speaker: Nate Henry Presentation TripalBIMS: the Breeding Information Management System in Tripal (abstract) Speaker: Sook Jung Presentation CAMbase: a Resource for CAM Plant Genomics (abstract) Speaker: Robert Clifford Moseley Presentation TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics (abstract) Speaker: Emily Grau Posters Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal (abstract) Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Brian Soto, Connor Wytko, Alex Feltus, Sook Jung, Kirstin Bett, and Dorrie Main Poster Hardwood Genomics Database (HGD): a genomic and genetic web--database for hardwood trees research (abstract) Chen M, Henry NL, Lane T, Cannon N, Coggeshall MV, Gailing O, Liang H, Romero-Severson J, Schlarbaum SE, Shumaker KL, Carlson JE, Staton ME Poster
Tripal at the Plant and Animal Genome XXIV Conference	Announcement	Tripal Codefest - January 8, 2016 Codefest Developers and users of Tripal met on January 8, 2016 to discuss current and future directions for Tripal modules and Tripal extension modules. For full proceedings and a list of attendees see the associated Google document. Topics Discussed ElasticSearch Tripal3 Chado Export of Data NoSQL Forums on Tripal.info Expression Data Comparative Map (CMap but more Tripal-y) Tripal.info Bulk Loader Shopping Cart Attendees Ethy Cannon (Iowa State) Ming Chen (University of Tennessee, Knoxville) Connor Wytko (Washington State University) Brian Soto (Washington State University) Katheryn Buble (Washington State University) Emily Grau (University of Connecticut) Valentin Guignon (Biodiversity International) Nate Henry (University of Tennessee, Knoxville) Sook Jung (Washington State University) Rob Moseley (University of Tennessee, Knoxville) Lacey-Anne Sanderson (University of Saskatchewan) Meg Staton (University of Tennessee, Knoxville) Jill Wegrzyn (University of Connecticut) Pooja Umale (National Center for Genome Resources, Santa Fe, NM) Jacqueline D. Campbell (Iowa State University) Taein Lee (Washington State University) Sudhansu Dash (National Center for Genome Resources, Santa Fe, NM) Gerard Lazo (USDA-ARS, Albany, CA) Tripal Database Network and Initiatives - January 10, 2016 A Tripal workshop was hosted at the Plant and Animal Genome XXIV Conference. Talks were given by Tripal core developers, extension developers, and website administrators. Organizers Lacey-Anne Sanderson - University of Saskatechewan Margaret Staton - University of Tennessee Talks Tripal v2: An Overview (abstract) Speaker: Lacey-Anne Sanderson Presentation The Future of Tripal: intuitive content creation, flexible data storage and web services (abstract) Speaker: Stephen P. Ficklin Presentation Overview of NRSP and Planned Tripal development (abstract) Speaker: Dorrie Main Extending Tripal to Manage Banana Genetic Resource Information (abstract) Speaker: Valentin Guignon Presentation Efforts by the Hardwood Genomics Database team to extend Tripal functionality (abstract) Speaker: Nate Henry Presentation TripalBIMS: the Breeding Information Management System in Tripal (abstract) Speaker: Sook Jung Presentation CAMbase: a Resource for CAM Plant Genomics (abstract) Speaker: Robert Clifford Moseley Presentation TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics (abstract) Speaker: Emily Grau Presentation Posters Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal (abstract) Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Brian Soto, Connor Wytko, Alex Feltus, Sook Jung, Kirstin Bett, and Dorrie Main Poster Hardwood Genomics Database (HGD): a genomic and genetic web--database for hardwood trees research (abstract) Chen M, Henry NL, Lane T, Cannon N, Coggeshall MV, Gailing O, Liang H, Romero-Severson J, Schlarbaum SE, Shumaker KL, Carlson JE, Staton ME Poster TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics Emily Grau, Steven A. Demurjian, Hans Vasquez Gross, Damian Gessler, David Neale, Jill Wegrzyn Poster
Tripal CodeFest 2022 Registration Open!	Announcement
Tripal Codefest and Workshop @ PAG	Announcement
Tripal Codefest at PAG 2019	Announcement	Meeting Details San Diego, CA. Room TBA. Thursday January 10th, 9:00am - 5:00pm: Codefest Friday, January 11th, 9:00am-2:30pm: Codefest continued Friday, January 11th, 3:00pm-5:00pm Monthly Tripal User's Meeting Codefest Topics To encourage coding over discussion during the Codefest, we have selected a few sessions topics, each with a predefined leader that will help prioritize tasks to work on as a group. If you would like to participate, please sign up for a group. Or, you can propose your own topic so long as you agree to lead it! Please sign up by adding your name to the session you are interested in (or would like to propose) at this document: https://docs.google.com/document/d/1yS8983SS62QhbROizIYmssnZpYa9S9FTJ9U7kvxHg00/edit?usp=sharing On December 4th during our normal online Tripal User's Meetings we will meet by groups (in different Zoom meetings) to plan our tasks for the Hackathon to help encourage more coding.
Tripal CodeFest in San Diego	Announcement	The Tripal community is going to have a one day CodeFest associated with the Plant and Animal Genome Conferece. It will be held the day before the conference begins, Friday, January 8th, 9-5 at the Town and Country Hotel. All skill levels are welcome. If you think you can attend, please start thinking about projects you are interested in working on or learning more about with other developers and users. More information will be posted as the date gets closer.
Tripal Codefest/Hackathon	Announcement
Tripal Demo at PAG	Announcement	Tripal will be presented at the international Plant and Animal Genome Conference (PAG) in San Diego in Wednesday January 19, 2011 at 1:30pm. For a complete listing of talks in this workshop see the GMOD Workshop Page.
Tripal Demo Site	Announcement	A new demo site, housed at GMOD, is now available for version 0.3b.