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Tripal v1.0 (6.x-1.0)
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Tripal v1.0 (6.x-1.0)
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Functions | |
| tripal_analysis_views_data () | |
| tripal_analysis_views_views_handlers () | |
| tripal_analysis_views_default_views () | |
| tripal_analysis_views_data | ( | ) |
Implements hook_views_data()
Purpose: Describe chado/tripal tables & fields to views
Definition at line 31 of file tripal_analysis.views.inc.
{
$data = array();
if (module_exists('tripal_views')) {
// Base Table: Analysis
$tablename = 'analysis';
// get the setup with the lightest priority. That's the table
// that currently integrated with views.
$priority = 9;
// check to see if the table is integrated. If it is then integrate it's
// corresponding 'chado_[table]' table.
if (!tripal_views_is_integrated($tablename, $priority)) {
$table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename, TRUE, $priority);
// Make table-specific modifications
$table_integration_array['fields']['program']['handlers']['filter']['name'] = 'tripal_views_handler_filter_select_string';
$table_integration_array['fields']['algorithm']['handlers']['filter']['name'] = 'tripal_views_handler_filter_select_string';
// Add in node relationships if chado is in the same db as drupal
if (tripal_core_chado_schema_exists()) {
$integrations = tripal_views_add_node_relationship_to_chado_table_integration($table_integration_array);
foreach ($integrations as $integration) {
tripal_views_integration_add_entry($integration);
}
}
else {
tripal_views_integration_add_entry($table_integration_array);
}
}
$tables = array(
'analysisfeature',
'analysisprop'
);
foreach ($tables as $tablename) {
$priority = 9;
if (!tripal_views_is_integrated($tablename, $priority)) {
$table_integration_array = tripal_views_get_integration_array_for_chado_table($tablename, FALSE, $priority);
tripal_views_integration_add_entry($table_integration_array);
}
}
}
return $data;
}
| tripal_analysis_views_default_views | ( | ) |
Implements hook_views_default_views().
$filters = $view->get_items('filter', 'default'); $filters['status'] = array( 'operator' => '=', 'value' => '1', 'group' => '0', 'exposed' => FALSE, 'expose' => array( 'operator' => FALSE, 'label' => '', ), 'id' => 'status', 'table' => 'node', 'field' => 'status', 'relationship' => 'none', ); $default_handler->override_option('filters', $filters);
Definition at line 139 of file tripal_analysis.views.inc.
{
$views = array();
if (!module_exists('tripal_views')) {
return $views;
}
// Main default view
$view = new view;
$view->name = 'analysis_listing';
$view->description = 'A default listing of analyses provided by Tripal';
$view->tag = 'chado default';
$view->base_table = 'analysis';
$view->core = 0;
$view->api_version = '2';
$view->disabled = FALSE; /* Edit this to true to make a default view disabled initially */
$handler = $view->new_display('default', 'Defaults', 'default');
$handler->override_option('fields', array(
'name' => array(
'label' => 'Name',
'alter' => array(
'alter_text' => 0,
'text' => '',
'make_link' => 0,
'path' => '',
'absolute' => 0,
'link_class' => '',
'alt' => '',
'rel' => '',
'prefix' => '',
'suffix' => '',
'target' => '',
'help' => '',
'trim' => 0,
'max_length' => '',
'word_boundary' => 1,
'ellipsis' => 1,
'html' => 0,
'strip_tags' => 0,
),
'empty' => '',
'hide_empty' => 0,
'empty_zero' => 0,
'hide_alter_empty' => 1,
'type' => 'separator',
'separator' => ', ',
'exclude' => 0,
'link_to_node' => 1,
'id' => 'name',
'table' => 'analysis',
'field' => 'name',
'relationship' => 'none',
),
'program' => array(
'label' => 'Program',
'alter' => array(
'alter_text' => 0,
'text' => '',
'make_link' => 0,
'path' => '',
'absolute' => 0,
'link_class' => '',
'alt' => '',
'rel' => '',
'prefix' => '',
'suffix' => '',
'target' => '',
'help' => '',
'trim' => 0,
'max_length' => '',
'word_boundary' => 1,
'ellipsis' => 1,
'html' => 0,
'strip_tags' => 0,
),
'empty' => '',
'hide_empty' => 0,
'empty_zero' => 0,
'hide_alter_empty' => 1,
'exclude' => 0,
'id' => 'program',
'table' => 'analysis',
'field' => 'program',
'relationship' => 'none',
),
'sourcename' => array(
'label' => 'Source',
'alter' => array(
'alter_text' => 0,
'text' => '',
'make_link' => 0,
'path' => '',
'absolute' => 0,
'link_class' => '',
'alt' => '',
'rel' => '',
'prefix' => '',
'suffix' => '',
'target' => '',
'help' => '',
'trim' => 0,
'max_length' => '',
'word_boundary' => 1,
'ellipsis' => 1,
'html' => 0,
'strip_tags' => 0,
),
'empty' => '',
'hide_empty' => 0,
'empty_zero' => 0,
'hide_alter_empty' => 1,
'exclude' => 0,
'id' => 'sourcename',
'table' => 'analysis',
'field' => 'sourcename',
'relationship' => 'none',
),
'timeexecuted' => array(
'label' => 'Time Executed',
'alter' => array(
'alter_text' => 0,
'text' => '',
'make_link' => 0,
'path' => '',
'absolute' => 0,
'link_class' => '',
'alt' => '',
'rel' => '',
'prefix' => '',
'suffix' => '',
'target' => '',
'help' => '',
'trim' => 0,
'max_length' => '',
'word_boundary' => 1,
'ellipsis' => 1,
'html' => 0,
'strip_tags' => 0,
),
'empty' => '',
'hide_empty' => 0,
'empty_zero' => 0,
'hide_alter_empty' => 1,
'date_format' => 'custom',
'custom_date_format' => 'F j, Y',
'exclude' => 0,
'id' => 'timeexecuted',
'table' => 'analysis',
'field' => 'timeexecuted',
'override' => array(
'button' => 'Override',
),
'relationship' => 'none',
),
));
$handler->override_option('filters', array(
'search_results' => array(
'operator' => '=',
'value' => '',
'group' => '0',
'exposed' => FALSE,
'expose' => array(
'operator' => FALSE,
'label' => '',
),
'id' => 'search_results',
'table' => 'views',
'field' => 'search_results',
'relationship' => 'none',
'apply_button' => 'Show ',
'no_results_text' => 'Click "Show" to see a list of all analysis matching the entered criteria. If you leave a any of the criteria blank then the analysis will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all analysis will be listed.',
),
'program' => array(
'operator' => '=',
'value' => '',
'group' => '0',
'exposed' => TRUE,
'expose' => array(
'use_operator' => 0,
'operator' => 'program_op',
'identifier' => 'program',
'label' => 'Program',
'remember' => 0,
),
'case' => 1,
'id' => 'program',
'table' => 'analysis',
'field' => 'program',
'relationship' => 'none',
'values_form_type' => 'select',
'multiple' => 1,
'optional' => 0,
'agg' => array(
'records_with' => 1,
'aggregates_with' => 0,
),
),
'timeexecuted' => array(
'operator' => '>',
'value' => array(
'type' => 'date',
'value' => '',
'min' => '',
'max' => '',
),
'group' => '0',
'exposed' => TRUE,
'expose' => array(
'use_operator' => 1,
'operator' => 'timeexecuted_op',
'identifier' => 'timeexecuted',
'label' => 'Time Executed',
'optional' => 1,
'remember' => 0,
),
'id' => 'timeexecuted',
'table' => 'analysis',
'field' => 'timeexecuted',
'relationship' => 'none',
'agg' => array(
'records_with' => 1,
'aggregates_with' => 0,
),
),
'name' => array(
'operator' => '~',
'value' => '',
'group' => '0',
'exposed' => TRUE,
'expose' => array(
'use_operator' => 0,
'operator' => 'name_op',
'identifier' => 'name',
'label' => 'Name Contains',
'bef_filter_description' => '',
'remember' => 0,
),
'case' => 0,
'id' => 'name',
'table' => 'analysis',
'field' => 'name',
'relationship' => 'none',
'values_form_type' => 'textfield',
'multiple' => 0,
'optional' => 0,
),
'sourcename' => array(
'operator' => '~',
'value' => '',
'group' => '0',
'exposed' => TRUE,
'expose' => array(
'use_operator' => 0,
'operator' => 'sourcename_op',
'identifier' => 'sourcename',
'label' => 'Source Contains',
'bef_filter_description' => '',
'remember' => 0,
),
'case' => 0,
'id' => 'sourcename',
'table' => 'analysis',
'field' => 'sourcename',
'relationship' => 'none',
),
));
$handler->override_option('access', array(
'type' => 'perm',
'perm' => 'access chado_analysis content',
));
$handler->override_option('cache', array(
'type' => 'none',
));
$handler->override_option('title', 'Analysis');
$handler->override_option('header', 'Click "Show" to see a list of all analysis matching the entered criteria. If you leave a any of the criteria blank then the analysis will be not be filtered based on that field. Furthermore, if you leave all criteria blank then all analysis will be listed.');
$handler->override_option('header_format', '2');
$handler->override_option('header_empty', 1);
$handler->override_option('empty', 'No analyses match the supplied criteria.');
$handler->override_option('empty_format', '1');
$handler->override_option('items_per_page', 50);
$handler->override_option('use_pager', '1');
$handler->override_option('style_plugin', 'table');
$handler->override_option('style_options', array(
'grouping' => '',
'override' => 1,
'sticky' => 0,
'order' => 'asc',
'summary' => '',
'columns' => array(
'name' => 'name',
'program' => 'program',
'sourcename' => 'sourcename',
'num_features' => 'num_features',
'timeexecuted' => 'timeexecuted',
),
'info' => array(
'name' => array(
'sortable' => 1,
'separator' => '',
),
'program' => array(
'sortable' => 1,
'separator' => '',
),
'sourcename' => array(
'sortable' => 1,
'separator' => '',
),
'num_features' => array(
'separator' => '',
),
'timeexecuted' => array(
'sortable' => 1,
'separator' => '',
),
),
'default' => 'name',
));
// this is needed so that fields/filters can be added to the default display later
$default_handler = $handler;
$handler = $view->new_display('page', 'Page', 'page_1');
$handler->override_option('path', 'chado/analyses');
$handler->override_option('menu', array(
'type' => 'normal',
'title' => 'Analyses',
'description' => 'An analysis is a particular type of a computational analysis; it may be a blast of one sequence against another, or an all by all blast, or a different kind of analysis altogether. It is a single unit of computation.',
'weight' => '10',
'name' => 'navigation',
));
$handler->override_option('tab_options', array(
'type' => 'none',
'title' => '',
'description' => '',
'weight' => 0,
'name' => 'navigation',
));
// Add code specific to a local chado installation
// NOTE: Edit $handler above to $default_handler for the default display
if (tripal_core_chado_schema_exists()) {
// Add nid field
$fields = $view->get_items('field', 'default');
$new_fields = array(
'nid' => array(
'label' => 'Nid',
'alter' => array(
'alter_text' => 0,
'text' => '',
'make_link' => 0,
'path' => '',
'absolute' => 0,
'link_class' => '',
'alt' => '',
'rel' => '',
'prefix' => '',
'suffix' => '',
'target' => '',
'help' => '',
'trim' => 0,
'max_length' => '',
'word_boundary' => 1,
'ellipsis' => 1,
'html' => 0,
'strip_tags' => 0,
),
'empty' => '',
'hide_empty' => 0,
'empty_zero' => 0,
'hide_alter_empty' => 1,
'link_to_node' => 0,
'exclude' => 1,
'id' => 'nid',
'table' => 'node',
'field' => 'nid',
'relationship' => 'none',
)
);
$fields = $new_fields + $fields;
// Adds analysis => Node relationship
$default_handler->override_option('relationships', array(
'nid' => array(
'label' => 'Analysis to Node',
'required' => 0,
'id' => 'nid',
'table' => 'chado_analysis',
'field' => 'nid',
'relationship' => 'none',
),
));
// Change analysis.name to have a link to the node
$fields['name']['link_to_node'] = 1;
$default_handler->override_option('fields', $fields);
// Only show records with published nodes
}
$views[$view->name] = $view;
return $views;
}
| tripal_analysis_views_views_handlers | ( | ) |
Implements hook_views_handlers()
Purpose: Register all custom handlers with views where a handler describes either "the type of field", "how a field should be filtered", "how a field should be sorted"
Definition at line 92 of file tripal_analysis.views.inc.
{
return array(
'info' => array(
'path' => drupal_get_path('module', 'tripal_analysis') . '/views/handlers',
),
'handlers' => array(
'views_handler_field_computed_analysis_nid' => array(
'parent' => 'views_handler_field_numeric',
),
'views_handler_field_readable_date' => array(
'parent' => 'views_handler_field',
),
),
);
}
1.7.4