Tripal v1.0 (6.x-1.0)
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tripal_core_chado_get_v1_2_tables | ( | ) |
Lists the table names in the v1.2 chado schema
.2
Definition at line 14006 of file tripal_core.schema_v1.2.api.inc.
{ $tables = array( 'acquisition', 'acquisition_relationship', 'acquisitionprop', 'analysis', 'analysisfeature', 'analysisfeatureprop', 'analysisprop', 'arraydesign', 'arraydesignprop', 'assay', 'assay_biomaterial', 'assay_project', 'assayprop', 'biomaterial', 'biomaterial_dbxref', 'biomaterial_relationship', 'biomaterial_treatment', 'biomaterialprop', 'cell_line', 'cell_line_cvterm', 'cell_line_cvtermprop', 'cell_line_dbxref', 'cell_line_feature', 'cell_line_library', 'cell_line_pub', 'cell_line_relationship', 'cell_line_synonym', 'cell_lineprop', 'cell_lineprop_pub', 'chadoprop', 'channel', 'contact', 'contact_relationship', 'control', 'cv', 'cvprop', 'cvterm', 'cvterm_dbxref', 'cvterm_relationship', 'cvtermpath', 'cvtermprop', 'cvtermsynonym', 'db', 'dbxref', 'dbxrefprop', 'eimage', 'element', 'element_relationship', 'elementresult', 'elementresult_relationship', 'environment', 'environment_cvterm', 'expression', 'expression_cvterm', 'expression_cvtermprop', 'expression_image', 'expression_pub', 'expressionprop', 'feature', 'feature_cvterm', 'feature_cvterm_dbxref', 'feature_cvterm_pub', 'feature_cvtermprop', 'feature_dbxref', 'feature_expression', 'feature_expressionprop', 'feature_genotype', 'feature_phenotype', 'feature_pub', 'feature_pubprop', 'feature_relationship', 'feature_relationship_pub', 'feature_relationshipprop', 'feature_relationshipprop_pub', 'feature_synonym', 'featureloc', 'featureloc_pub', 'featuremap', 'featuremap_pub', 'featurepos', 'featureprop', 'featureprop_pub', 'featurerange', 'genotype', 'genotypeprop', 'library', 'library_cvterm', 'library_dbxref', 'library_feature', 'library_pub', 'library_synonym', 'libraryprop', 'libraryprop_pub', 'magedocumentation', 'mageml', 'nd_experiment', 'nd_experiment_contact', 'nd_experiment_dbxref', 'nd_experiment_genotype', 'nd_experiment_phenotype', 'nd_experiment_project', 'nd_experiment_protocol', 'nd_experiment_pub', 'nd_experiment_stock', 'nd_experiment_stock_dbxref', 'nd_experiment_stockprop', 'nd_experimentprop', 'nd_geolocation', 'nd_geolocationprop', 'nd_protocol', 'nd_protocol_reagent', 'nd_protocolprop', 'nd_reagent', 'nd_reagent_relationship', 'nd_reagentprop', 'organism', 'organism_dbxref', 'organismprop', 'phendesc', 'phenotype', 'phenotype_comparison', 'phenotype_comparison_cvterm', 'phenotype_cvterm', 'phenstatement', 'phylonode', 'phylonode_dbxref', 'phylonode_organism', 'phylonode_pub', 'phylonode_relationship', 'phylonodeprop', 'phylotree', 'phylotree_pub', 'project', 'project_contact', 'project_pub', 'project_relationship', 'projectprop', 'protocol', 'protocolparam', 'pub', 'pub_dbxref', 'pub_relationship', 'pubauthor', 'pubprop', 'quantification', 'quantification_relationship', 'quantificationprop', 'stock', 'stock_cvterm', 'stock_cvtermprop', 'stock_dbxref', 'stock_dbxrefprop', 'stock_genotype', 'stock_pub', 'stock_relationship', 'stock_relationship_cvterm', 'stock_relationship_pub', 'stockcollection', 'stockcollection_stock', 'stockcollectionprop', 'stockprop', 'stockprop_pub', 'study', 'study_assay', 'studydesign', 'studydesignprop', 'studyfactor', 'studyfactorvalue', 'studyprop', 'studyprop_feature', 'synonym', 'tableinfo', 'treatment' ); return $tables; }
tripal_core_chado_schema_v1_2_acquisition | ( | ) |
Implements hook_chado_schema_v1_2_acquisition() Purpose: To describe the structure of 'acquisition' to tripal
.2
Definition at line 49 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisition_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'channel_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'acquisitiondate' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => FALSE, 'default' => 'ow(', ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'uri' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'acquisition_id', ), 'unique keys' => array( 'acquisition_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'acquisition_idx1' => array( 0 => 'assay_id', ), 'acquisition_idx2' => array( 0 => 'protocol_id', ), 'acquisition_idx3' => array( 0 => 'channel_id', ), ), 'foreign keys' => array( 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), 'channel' => array( 'table' => 'channel', 'columns' => array( 'channel_id' => 'channel_id', ), ), ), 'table' => 'acquisition', 'referring_tables' => array( 0 => 'acquisition_relationship', 2 => 'acquisitionprop', 3 => 'quantification', ), ); return $description; }
tripal_core_chado_schema_v1_2_acquisition_relationship | ( | ) |
Implements hook_chado_schema_v1_2_acquisition_relationship() Purpose: To describe the structure of 'acquisition_relationship' to tripal
.2
Definition at line 151 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisition_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'acquisition_relationship_id', ), 'unique keys' => array( 'acquisition_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'rank', ), ), 'indexes' => array( 'acquisition_relationship_idx1' => array( 0 => 'subject_id', ), 'acquisition_relationship_idx2' => array( 0 => 'type_id', ), 'acquisition_relationship_idx3' => array( 0 => 'object_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'acquisition' => array( 'table' => 'acquisition', 'columns' => array( 'subject_id' => 'acquisition_id', 'object_id' => 'acquisition_id', ), ), ), 'table' => 'acquisition_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_acquisitionprop | ( | ) |
Implements hook_chado_schema_v1_2_acquisitionprop() Purpose: To describe the structure of 'acquisitionprop' to tripal
.2
Definition at line 242 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'acquisitionprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'acquisition_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'acquisitionprop_id', ), 'unique keys' => array( 'acquisitionprop_c1' => array( 0 => 'acquisition_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'acquisitionprop_idx1' => array( 0 => 'acquisition_id', ), 'acquisitionprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'acquisition' => array( 'table' => 'acquisition', 'columns' => array( 'acquisition_id' => 'acquisition_id', ), ), ), 'table' => 'acquisitionprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_analysis | ( | ) |
Implements hook_chado_schema_v1_2_analysis() Purpose: To describe the structure of 'analysis' to tripal
.2
Definition at line 323 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'referring_tables' => array( 0 => 'analysisfeature', 1 => 'analysisprop', 2 => 'phylotree', 3 => 'quantification', ), 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysis_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'program' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'programversion' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'algorithm' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'sourcename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'sourceversion' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'sourceuri' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'timeexecuted' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), ), 'primary key' => array( 0 => 'analysis_id', ), 'unique keys' => array( 'analysis_c1' => array( 0 => 'program', 1 => 'programversion', 2 => 'sourcename', ), ), 'foreign keys' => array( ), 'table' => 'analysis', ); return $description; }
tripal_core_chado_schema_v1_2_analysisfeature | ( | ) |
Implements hook_chado_schema_v1_2_analysisfeature() Purpose: To describe the structure of 'analysisfeature' to tripal
.2
Definition at line 420 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisfeature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'analysis_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rawscore' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => FALSE, ), 'normscore' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => FALSE, ), 'significance' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => FALSE, ), 'identity' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'analysisfeature_id', ), 'unique keys' => array( 'analysisfeature_c1' => array( 0 => 'feature_id', 1 => 'analysis_id', ), ), 'indexes' => array( 'analysisfeature_idx1' => array( 0 => 'feature_id', ), 'analysisfeature_idx2' => array( 0 => 'analysis_id', ), ), 'foreign keys' => array( 'analysis' => array( 'table' => 'analysis', 'columns' => array( 'analysis_id' => 'analysis_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), ), 'table' => 'analysisfeature', 'referring_tables' => array( 0 => 'analysisfeatureprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_analysisfeatureprop | ( | ) |
Implements hook_chado_schema_v1_2_analysisfeatureprop() Purpose: To describe the structure of 'analysisfeatureprop' to tripal
.2
Definition at line 515 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisfeatureprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'analysisfeature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'analysisfeatureprop_id', ), 'unique keys' => array( 'analysisfeature_id_type_id_rank' => array( 0 => 'analysisfeature_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'analysisfeature' => array( 'table' => 'analysisfeature', 'columns' => array( 'analysisfeature_id' => 'analysisfeature_id', ), ), ), 'table' => 'analysisfeatureprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_analysisprop | ( | ) |
Implements hook_chado_schema_v1_2_analysisprop() Purpose: To describe the structure of 'analysisprop' to tripal
.2
Definition at line 587 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'analysisprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'analysis_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'analysisprop_id', ), 'unique keys' => array( 'analysisprop_c1' => array( 0 => 'analysis_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'analysisprop_idx1' => array( 0 => 'analysis_id', ), 'analysisprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'analysis' => array( 'table' => 'analysis', 'columns' => array( 'analysis_id' => 'analysis_id', ), ), ), 'table' => 'analysisprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_arraydesign | ( | ) |
Implements hook_chado_schema_v1_2_arraydesign() Purpose: To describe the structure of 'arraydesign' to tripal
.2
Definition at line 668 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'arraydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'manufacturer_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'platformtype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'substratetype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'version' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'array_dimensions' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'element_dimensions' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'num_of_elements' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_array_columns' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_array_rows' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_grid_columns' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_grid_rows' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_sub_columns' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'num_sub_rows' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'arraydesign_id', ), 'unique keys' => array( 'arraydesign_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'arraydesign_idx1' => array( 0 => 'manufacturer_id', ), 'arraydesign_idx2' => array( 0 => 'platformtype_id', ), 'arraydesign_idx3' => array( 0 => 'substratetype_id', ), 'arraydesign_idx4' => array( 0 => 'protocol_id', ), 'arraydesign_idx5' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'platformtype_id' => 'cvterm_id', 'substratetype_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'manufacturer_id' => 'contact_id', ), ), 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), ), 'table' => 'arraydesign', 'referring_tables' => array( 0 => 'arraydesignprop', 1 => 'assay', 2 => 'element', ), ); return $description; }
tripal_core_chado_schema_v1_2_arraydesignprop | ( | ) |
Implements hook_chado_schema_v1_2_arraydesignprop() Purpose: To describe the structure of 'arraydesignprop' to tripal
.2
Definition at line 837 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'arraydesignprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'arraydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'arraydesignprop_id', ), 'unique keys' => array( 'arraydesignprop_c1' => array( 0 => 'arraydesign_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'arraydesignprop_idx1' => array( 0 => 'arraydesign_id', ), 'arraydesignprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'arraydesign' => array( 'table' => 'arraydesign', 'columns' => array( 'arraydesign_id' => 'arraydesign_id', ), ), ), 'table' => 'arraydesignprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_assay | ( | ) |
Implements hook_chado_schema_v1_2_assay() Purpose: To describe the structure of 'assay' to tripal
.2
Definition at line 918 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'arraydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'assaydate' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => FALSE, 'default' => 'ow(', ), 'arrayidentifier' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'arraybatchidentifier' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'operator_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'assay_id', ), 'unique keys' => array( 'assay_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'assay_idx1' => array( 0 => 'arraydesign_id', ), 'assay_idx2' => array( 0 => 'protocol_id', ), 'assay_idx3' => array( 0 => 'operator_id', ), 'assay_idx4' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'operator_id' => 'contact_id', ), ), 'arraydesign' => array( 'table' => 'arraydesign', 'columns' => array( 'arraydesign_id' => 'arraydesign_id', ), ), 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), ), 'table' => 'assay', 'referring_tables' => array( 0 => 'acquisition', 1 => 'assay_biomaterial', 2 => 'assay_project', 3 => 'assayprop', 4 => 'control', 5 => 'study_assay', 6 => 'studyfactorvalue', ), ); return $description; }
tripal_core_chado_schema_v1_2_assay_biomaterial | ( | ) |
Implements hook_chado_schema_v1_2_assay_biomaterial() Purpose: To describe the structure of 'assay_biomaterial' to tripal
.2
Definition at line 1048 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'channel_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'assay_biomaterial_id', ), 'unique keys' => array( 'assay_biomaterial_c1' => array( 0 => 'assay_id', 1 => 'biomaterial_id', 2 => 'channel_id', 3 => 'rank', ), ), 'indexes' => array( 'assay_biomaterial_idx1' => array( 0 => 'assay_id', ), 'assay_biomaterial_idx2' => array( 0 => 'biomaterial_id', ), 'assay_biomaterial_idx3' => array( 0 => 'channel_id', ), ), 'foreign keys' => array( 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'biomaterial_id' => 'biomaterial_id', ), ), 'channel' => array( 'table' => 'channel', 'columns' => array( 'channel_id' => 'channel_id', ), ), ), 'table' => 'assay_biomaterial', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_assay_project | ( | ) |
Implements hook_chado_schema_v1_2_assay_project() Purpose: To describe the structure of 'assay_project' to tripal
.2
Definition at line 1139 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'assay_project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'assay_project_id', ), 'unique keys' => array( 'assay_project_c1' => array( 0 => 'assay_id', 1 => 'project_id', ), ), 'indexes' => array( 'assay_project_idx1' => array( 0 => 'assay_id', ), 'assay_project_idx2' => array( 0 => 'project_id', ), ), 'foreign keys' => array( 'project' => array( 'table' => 'project', 'columns' => array( 'project_id' => 'project_id', ), ), 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), ), 'table' => 'assay_project', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_assayprop | ( | ) |
Implements hook_chado_schema_v1_2_assayprop() Purpose: To describe the structure of 'assayprop' to tripal
.2
Definition at line 1208 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'assayprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'assayprop_id', ), 'unique keys' => array( 'assayprop_c1' => array( 0 => 'assay_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'assayprop_idx1' => array( 0 => 'assay_id', ), 'assayprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), ), 'table' => 'assayprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_biomaterial | ( | ) |
Implements hook_chado_schema_v1_2_biomaterial() Purpose: To describe the structure of 'biomaterial' to tripal
.2
Definition at line 1289 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'taxon_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'biosourceprovider_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'biomaterial_id', ), 'unique keys' => array( 'biomaterial_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'biomaterial_idx1' => array( 0 => 'taxon_id', ), 'biomaterial_idx2' => array( 0 => 'biosourceprovider_id', ), 'biomaterial_idx3' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'taxon_id' => 'organism_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'biosourceprovider_id' => 'contact_id', ), ), ), 'table' => 'biomaterial', 'referring_tables' => array( 0 => 'assay_biomaterial', 1 => 'biomaterial_dbxref', 2 => 'biomaterial_relationship', 4 => 'biomaterial_treatment', 5 => 'biomaterialprop', 6 => 'treatment', ), ); return $description; }
tripal_core_chado_schema_v1_2_biomaterial_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_biomaterial_dbxref() Purpose: To describe the structure of 'biomaterial_dbxref' to tripal
.2
Definition at line 1388 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'biomaterial_dbxref_id', ), 'unique keys' => array( 'biomaterial_dbxref_c1' => array( 0 => 'biomaterial_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'biomaterial_dbxref_idx1' => array( 0 => 'biomaterial_id', ), 'biomaterial_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'biomaterial_id' => 'biomaterial_id', ), ), ), 'table' => 'biomaterial_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_biomaterial_relationship | ( | ) |
Implements hook_chado_schema_v1_2_biomaterial_relationship() Purpose: To describe the structure of 'biomaterial_relationship' to tripal
.2
Definition at line 1457 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'biomaterial_relationship_id', ), 'unique keys' => array( 'biomaterial_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'biomaterial_relationship_idx1' => array( 0 => 'subject_id', ), 'biomaterial_relationship_idx2' => array( 0 => 'object_id', ), 'biomaterial_relationship_idx3' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'subject_id' => 'biomaterial_id', 'object_id' => 'biomaterial_id', ), ), ), 'table' => 'biomaterial_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_biomaterial_treatment | ( | ) |
Implements hook_chado_schema_v1_2_biomaterial_treatment() Purpose: To describe the structure of 'biomaterial_treatment' to tripal
.2
Definition at line 1536 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterial_treatment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'treatment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'unittype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'biomaterial_treatment_id', ), 'unique keys' => array( 'biomaterial_treatment_c1' => array( 0 => 'biomaterial_id', 1 => 'treatment_id', ), ), 'indexes' => array( 'biomaterial_treatment_idx1' => array( 0 => 'biomaterial_id', ), 'biomaterial_treatment_idx2' => array( 0 => 'treatment_id', ), 'biomaterial_treatment_idx3' => array( 0 => 'unittype_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'unittype_id' => 'cvterm_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'biomaterial_id' => 'biomaterial_id', ), ), 'treatment' => array( 'table' => 'treatment', 'columns' => array( 'treatment_id' => 'treatment_id', ), ), ), 'table' => 'biomaterial_treatment', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_biomaterialprop | ( | ) |
Implements hook_chado_schema_v1_2_biomaterialprop() Purpose: To describe the structure of 'biomaterialprop' to tripal
.2
Definition at line 1630 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'biomaterialprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'biomaterialprop_id', ), 'unique keys' => array( 'biomaterialprop_c1' => array( 0 => 'biomaterial_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'biomaterialprop_idx1' => array( 0 => 'biomaterial_id', ), 'biomaterialprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'biomaterial_id' => 'biomaterial_id', ), ), ), 'table' => 'biomaterialprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line | ( | ) |
Implements hook_chado_schema_v1_2_cell_line() Purpose: To describe the structure of 'cell_line' to tripal
.2
Definition at line 1712 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'timeaccessioned' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), 'timelastmodified' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), ), 'primary key' => array( 0 => 'cell_line_id', ), 'unique keys' => array( 'cell_line_c1' => array( 0 => 'uniquename', 1 => 'organism_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), ), 'table' => 'cell_line', 'referring_tables' => array( 0 => 'cell_line_cvterm', 1 => 'cell_line_dbxref', 2 => 'cell_line_feature', 3 => 'cell_line_library', 4 => 'cell_line_pub', 5 => 'cell_line_relationship', 7 => 'cell_line_synonym', 8 => 'cell_lineprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_cvterm() Purpose: To describe the structure of 'cell_line_cvterm' to tripal
.2
Definition at line 1795 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cell_line_cvterm_id', ), 'unique keys' => array( 'cell_line_cvterm_c1' => array( 0 => 'cell_line_id', 1 => 'cvterm_id', 2 => 'pub_id', 3 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_cvterm', 'referring_tables' => array( 0 => 'cell_line_cvtermprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_cvtermprop | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_cvtermprop() Purpose: To describe the structure of 'cell_line_cvtermprop' to tripal
.2
Definition at line 1877 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_cvtermprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cell_line_cvtermprop_id', ), 'unique keys' => array( 'cell_line_cvtermprop_c1' => array( 0 => 'cell_line_cvterm_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'cell_line_cvterm' => array( 'table' => 'cell_line_cvterm', 'columns' => array( 'cell_line_cvterm_id' => 'cell_line_cvterm_id', ), ), ), 'table' => 'cell_line_cvtermprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_dbxref() Purpose: To describe the structure of 'cell_line_dbxref' to tripal
.2
Definition at line 1950 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), ), 'primary key' => array( 0 => 'cell_line_dbxref_id', ), 'unique keys' => array( 'cell_line_dbxref_c1' => array( 0 => 'cell_line_id', 1 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_feature | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_feature() Purpose: To describe the structure of 'cell_line_feature' to tripal
.2
Definition at line 2017 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cell_line_feature_id', ), 'unique keys' => array( 'cell_line_feature_c1' => array( 0 => 'cell_line_id', 1 => 'feature_id', 2 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_feature', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_library | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_library() Purpose: To describe the structure of 'cell_line_library' to tripal
.2
Definition at line 2090 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cell_line_library_id', ), 'unique keys' => array( 'cell_line_library_c1' => array( 0 => 'cell_line_id', 1 => 'library_id', 2 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_library', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_pub | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_pub() Purpose: To describe the structure of 'cell_line_pub' to tripal
.2
Definition at line 2163 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cell_line_pub_id', ), 'unique keys' => array( 'cell_line_pub_c1' => array( 0 => 'cell_line_id', 1 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_relationship | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_relationship() Purpose: To describe the structure of 'cell_line_relationship' to tripal
.2
Definition at line 2224 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cell_line_relationship_id', ), 'unique keys' => array( 'cell_line_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'subject_id' => 'cell_line_id', 'object_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_line_synonym | ( | ) |
Implements hook_chado_schema_v1_2_cell_line_synonym() Purpose: To describe the structure of 'cell_line_synonym' to tripal
.2
Definition at line 2292 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_line_synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'is_internal' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), ), 'primary key' => array( 0 => 'cell_line_synonym_id', ), 'unique keys' => array( 'cell_line_synonym_c1' => array( 0 => 'synonym_id', 1 => 'cell_line_id', 2 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'synonym' => array( 'table' => 'synonym', 'columns' => array( 'synonym_id' => 'synonym_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_line_synonym', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cell_lineprop | ( | ) |
Implements hook_chado_schema_v1_2_cell_lineprop() Purpose: To describe the structure of 'cell_lineprop' to tripal
.2
Definition at line 2377 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_lineprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_line_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cell_lineprop_id', ), 'unique keys' => array( 'cell_lineprop_c1' => array( 0 => 'cell_line_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'cell_line' => array( 'table' => 'cell_line', 'columns' => array( 'cell_line_id' => 'cell_line_id', ), ), ), 'table' => 'cell_lineprop', 'referring_tables' => array( 0 => 'cell_lineprop_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_cell_lineprop_pub | ( | ) |
Implements hook_chado_schema_v1_2_cell_lineprop_pub() Purpose: To describe the structure of 'cell_lineprop_pub' to tripal
.2
Definition at line 2452 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cell_lineprop_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cell_lineprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cell_lineprop_pub_id', ), 'unique keys' => array( 'cell_lineprop_pub_c1' => array( 0 => 'cell_lineprop_id', 1 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'cell_lineprop' => array( 'table' => 'cell_lineprop', 'columns' => array( 'cell_lineprop_id' => 'cell_lineprop_id', ), ), ), 'table' => 'cell_lineprop_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_chadoprop | ( | ) |
Implements hook_chado_schema_v1_2_chadoprop() Purpose: To describe the structure of 'chadoprop' to tripal
.2
Definition at line 2513 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'chadoprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'chadoprop_id', ), 'unique keys' => array( 'chadoprop_c1' => array( 0 => 'type_id', 1 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'chadoprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_channel | ( | ) |
Implements hook_chado_schema_v1_2_channel() Purpose: To describe the structure of 'channel' to tripal
.2
Definition at line 2574 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'channel_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'definition' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'channel_id', ), 'unique keys' => array( 'channel_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( ), 'table' => 'channel', 'referring_tables' => array( 0 => 'acquisition', 1 => 'assay_biomaterial', ), ); return $description; }
tripal_core_chado_schema_v1_2_contact | ( | ) |
Implements hook_chado_schema_v1_2_contact() Purpose: To describe the structure of 'contact' to tripal
.2
Definition at line 2625 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'contact_id', ), 'unique keys' => array( 'contact_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'contact', 'referring_tables' => array( 0 => 'arraydesign', 1 => 'assay', 2 => 'biomaterial', 3 => 'contact_relationship', 5 => 'nd_experiment_contact', 6 => 'project_contact', 14 => 'quantification', 15 => 'stockcollection', 16 => 'study', ), ); return $description; }
tripal_core_chado_schema_v1_2_contact_relationship | ( | ) |
Implements hook_chado_schema_v1_2_contact_relationship() Purpose: To describe the structure of 'contact_relationship' to tripal
.2
Definition at line 2696 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'contact_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'contact_relationship_id', ), 'unique keys' => array( 'contact_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'contact_relationship_idx1' => array( 0 => 'type_id', ), 'contact_relationship_idx2' => array( 0 => 'subject_id', ), 'contact_relationship_idx3' => array( 0 => 'object_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'subject_id' => 'contact_id', 'object_id' => 'contact_id', ), ), ), 'table' => 'contact_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_control | ( | ) |
Implements hook_chado_schema_v1_2_control() Purpose: To describe the structure of 'control' to tripal
.2
Definition at line 2775 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'control_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'tableinfo_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'row_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'control_id', ), 'indexes' => array( 'control_idx1' => array( 0 => 'type_id', ), 'control_idx2' => array( 0 => 'assay_id', ), 'control_idx3' => array( 0 => 'tableinfo_id', ), 'control_idx4' => array( 0 => 'row_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'tableinfo' => array( 'table' => 'tableinfo', 'columns' => array( 'tableinfo_id' => 'tableinfo_id', ), ), 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), ), 'table' => 'control', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cv | ( | ) |
Implements hook_chado_schema_v1_2_cv() Purpose: To describe the structure of 'cv' to tripal
.2
Definition at line 2876 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cv_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'definition' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'cv_id', ), 'unique keys' => array( 'cv_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( ), 'table' => 'cv', 'referring_tables' => array( 0 => 'cvprop', 1 => 'cvterm', 2 => 'cvtermpath', ), ); return $description; }
tripal_core_chado_schema_v1_2_cvprop | ( | ) |
Implements hook_chado_schema_v1_2_cvprop() Purpose: To describe the structure of 'cvprop' to tripal
.2
Definition at line 2929 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cv_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cvprop_id', ), 'unique keys' => array( 'cvprop_c1' => array( 0 => 'cv_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'cv' => array( 'table' => 'cv', 'columns' => array( 'cv_id' => 'cv_id', ), ), ), 'table' => 'cvprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_cvterm() Purpose: To describe the structure of 'cvterm' to tripal
.2
Definition at line 3002 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cv_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => TRUE, ), 'definition' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_obsolete' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'is_relationshiptype' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cvterm_id', ), 'unique keys' => array( 'cvterm_c1' => array( 0 => 'name', 1 => 'cv_id', 2 => 'is_obsolete', ), 'cvterm_c2' => array( 0 => 'dbxref_id', ), ), 'indexes' => array( 'cvterm_idx1' => array( 0 => 'cv_id', ), 'cvterm_idx2' => array( 0 => 'name', ), 'cvterm_idx3' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'cv' => array( 'table' => 'cv', 'columns' => array( 'cv_id' => 'cv_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'cvterm', 'referring_tables' => array( 0 => 'acquisition_relationship', 1 => 'acquisitionprop', 2 => 'analysisfeatureprop', 3 => 'analysisprop', 4 => 'arraydesign', 6 => 'arraydesignprop', 7 => 'assayprop', 8 => 'biomaterial_relationship', 9 => 'biomaterial_treatment', 10 => 'biomaterialprop', 11 => 'cell_line_cvterm', 12 => 'cell_line_cvtermprop', 13 => 'cell_line_relationship', 14 => 'cell_lineprop', 15 => 'chadoprop', 23 => 'contact', 24 => 'contact_relationship', 25 => 'control', 26 => 'cvprop', 27 => 'cvterm_dbxref', 28 => 'cvterm_relationship', 31 => 'cvtermpath', 34 => 'cvtermprop', 36 => 'cvtermsynonym', 38 => 'dbxrefprop', 39 => 'element', 40 => 'element_relationship', 41 => 'elementresult_relationship', 42 => 'environment_cvterm', 43 => 'expression_cvterm', 45 => 'expression_cvtermprop', 46 => 'expressionprop', 47 => 'feature', 48 => 'feature_cvterm', 49 => 'feature_cvtermprop', 50 => 'feature_expressionprop', 51 => 'feature_genotype', 52 => 'feature_pubprop', 53 => 'feature_relationship', 54 => 'feature_relationshipprop', 55 => 'featuremap', 56 => 'featureprop', 57 => 'genotype', 58 => 'genotypeprop', 66 => 'library', 67 => 'library_cvterm', 68 => 'libraryprop', 69 => 'nd_experiment', 70 => 'nd_experiment_stock', 71 => 'nd_experiment_stockprop', 72 => 'nd_experimentprop', 73 => 'nd_geolocationprop', 74 => 'nd_protocol', 75 => 'nd_protocol_reagent', 76 => 'nd_protocolprop', 77 => 'nd_reagent', 78 => 'nd_reagent_relationship', 79 => 'nd_reagentprop', 80 => 'organismprop', 81 => 'phendesc', 82 => 'phenotype', 86 => 'phenotype_comparison_cvterm', 87 => 'phenotype_cvterm', 88 => 'phenstatement', 89 => 'phylonode', 90 => 'phylonode_relationship', 91 => 'phylonodeprop', 92 => 'phylotree', 93 => 'project_relationship', 101 => 'projectprop', 109 => 'protocol', 110 => 'protocolparam', 112 => 'pub', 113 => 'pub_relationship', 114 => 'pubprop', 115 => 'quantification_relationship', 116 => 'quantificationprop', 117 => 'stock', 118 => 'stock_cvterm', 119 => 'stock_cvtermprop', 127 => 'stock_dbxrefprop', 135 => 'stock_relationship', 136 => 'stock_relationship_cvterm', 144 => 'stockcollection', 145 => 'stockcollectionprop', 146 => 'stockprop', 147 => 'studydesignprop', 148 => 'studyfactor', 149 => 'studyprop', 150 => 'studyprop_feature', 151 => 'synonym', 152 => 'treatment', ), ); return $description; }
tripal_core_chado_schema_v1_2_cvterm_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_cvterm_dbxref() Purpose: To describe the structure of 'cvterm_dbxref' to tripal
.2
Definition at line 3194 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_for_definition' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cvterm_dbxref_id', ), 'unique keys' => array( 'cvterm_dbxref_c1' => array( 0 => 'cvterm_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'cvterm_dbxref_idx1' => array( 0 => 'cvterm_id', ), 'cvterm_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'cvterm_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cvterm_relationship | ( | ) |
Implements hook_chado_schema_v1_2_cvterm_relationship() Purpose: To describe the structure of 'cvterm_relationship' to tripal
.2
Definition at line 3269 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvterm_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'cvterm_relationship_id', ), 'unique keys' => array( 'cvterm_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'cvterm_relationship_idx1' => array( 0 => 'type_id', ), 'cvterm_relationship_idx2' => array( 0 => 'subject_id', ), 'cvterm_relationship_idx3' => array( 0 => 'object_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', 'subject_id' => 'cvterm_id', 'object_id' => 'cvterm_id', ), ), ), 'table' => 'cvterm_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cvtermpath | ( | ) |
Implements hook_chado_schema_v1_2_cvtermpath() Purpose: To describe the structure of 'cvtermpath' to tripal
.2
Definition at line 3343 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermpath_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cv_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pathdistance' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'cvtermpath_id', ), 'unique keys' => array( 'cvtermpath_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'pathdistance', ), ), 'indexes' => array( 'cvtermpath_idx1' => array( 0 => 'type_id', ), 'cvtermpath_idx2' => array( 0 => 'subject_id', ), 'cvtermpath_idx3' => array( 0 => 'object_id', ), 'cvtermpath_idx4' => array( 0 => 'cv_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', 'subject_id' => 'cvterm_id', 'object_id' => 'cvterm_id', ), ), 'cv' => array( 'table' => 'cv', 'columns' => array( 'cv_id' => 'cv_id', ), ), ), 'table' => 'cvtermpath', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cvtermprop | ( | ) |
Implements hook_chado_schema_v1_2_cvtermprop() Purpose: To describe the structure of 'cvtermprop' to tripal
.2
Definition at line 3437 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, 'default' => '', ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'cvtermprop_id', ), 'unique keys' => array( 'cvterm_id' => array( 0 => 'cvterm_id', 1 => 'type_id', 2 => 'value', 3 => 'rank', ), ), 'indexes' => array( 'cvtermprop_idx1' => array( 0 => 'cvterm_id', ), 'cvtermprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', 'type_id' => 'cvterm_id', ), ), ), 'table' => 'cvtermprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_cvtermsynonym | ( | ) |
Implements hook_chado_schema_v1_2_cvtermsynonym() Purpose: To describe the structure of 'cvtermsynonym' to tripal
.2
Definition at line 3515 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'cvtermsynonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'synonym' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '1024', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'cvtermsynonym_id', ), 'unique keys' => array( 'cvtermsynonym_c1' => array( 0 => 'cvterm_id', 1 => 'synonym', ), ), 'indexes' => array( 'cvtermsynonym_idx1' => array( 0 => 'cvterm_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', 'type_id' => 'cvterm_id', ), ), ), 'table' => 'cvtermsynonym', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_db | ( | ) |
Implements hook_chado_schema_v1_2_db() Purpose: To describe the structure of 'db' to tripal
.2
Definition at line 3582 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'db_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'urlprefix' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'url' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'db_id', ), 'unique keys' => array( 'db_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( ), 'table' => 'db', 'referring_tables' => array( 0 => 'dbxref', ), ); return $description; }
tripal_core_chado_schema_v1_2_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_dbxref() Purpose: To describe the structure of 'dbxref' to tripal
.2
Definition at line 3646 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'db_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'accession' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'version' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, 'default' => '', ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'dbxref_id', ), 'unique keys' => array( 'dbxref_c1' => array( 0 => 'db_id', 1 => 'accession', 2 => 'version', ), ), 'indexes' => array( 'dbxref_idx1' => array( 0 => 'db_id', ), 'dbxref_idx2' => array( 0 => 'accession', ), 'dbxref_idx3' => array( 0 => 'version', ), ), 'foreign keys' => array( 'db' => array( 'table' => 'db', 'columns' => array( 'db_id' => 'db_id', ), ), ), 'table' => 'dbxref', 'referring_tables' => array( 0 => 'arraydesign', 1 => 'assay', 2 => 'biomaterial', 3 => 'biomaterial_dbxref', 4 => 'cell_line_dbxref', 5 => 'cvterm', 6 => 'cvterm_dbxref', 7 => 'dbxrefprop', 8 => 'element', 9 => 'feature', 10 => 'feature_cvterm_dbxref', 11 => 'feature_dbxref', 12 => 'library_dbxref', 13 => 'nd_experiment_dbxref', 14 => 'nd_experiment_stock_dbxref', 15 => 'organism_dbxref', 16 => 'phylonode_dbxref', 17 => 'phylotree', 18 => 'protocol', 19 => 'pub_dbxref', 20 => 'stock', 21 => 'stock_dbxref', 22 => 'study', ), ); return $description; }
tripal_core_chado_schema_v1_2_dbxrefprop | ( | ) |
Implements hook_chado_schema_v1_2_dbxrefprop() Purpose: To describe the structure of 'dbxrefprop' to tripal
.2
Definition at line 3750 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'dbxrefprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, 'default' => '', ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'dbxrefprop_id', ), 'unique keys' => array( 'dbxrefprop_c1' => array( 0 => 'dbxref_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'dbxrefprop_idx1' => array( 0 => 'dbxref_id', ), 'dbxrefprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'dbxrefprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_eimage | ( | ) |
Implements hook_chado_schema_v1_2_eimage() Purpose: To describe the structure of 'eimage' to tripal
.2
Definition at line 3832 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'eimage_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'eimage_data' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'eimage_type' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'image_uri' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'eimage_id', ), 'foreign keys' => array( ), 'table' => 'eimage', 'referring_tables' => array( 0 => 'expression_image', ), ); return $description; }
tripal_core_chado_schema_v1_2_element | ( | ) |
Implements hook_chado_schema_v1_2_element() Purpose: To describe the structure of 'element' to tripal
.2
Definition at line 3884 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'element_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'arraydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'element_id', ), 'unique keys' => array( 'element_c1' => array( 0 => 'feature_id', 1 => 'arraydesign_id', ), ), 'indexes' => array( 'element_idx1' => array( 0 => 'feature_id', ), 'element_idx2' => array( 0 => 'arraydesign_id', ), 'element_idx3' => array( 0 => 'type_id', ), 'element_idx4' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'arraydesign' => array( 'table' => 'arraydesign', 'columns' => array( 'arraydesign_id' => 'arraydesign_id', ), ), ), 'table' => 'element', 'referring_tables' => array( 0 => 'element_relationship', 2 => 'elementresult', ), ); return $description; }
tripal_core_chado_schema_v1_2_element_relationship | ( | ) |
Implements hook_chado_schema_v1_2_element_relationship() Purpose: To describe the structure of 'element_relationship' to tripal
.2
Definition at line 3984 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'element_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'element_relationship_id', ), 'unique keys' => array( 'element_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'rank', ), ), 'indexes' => array( 'element_relationship_idx1' => array( 0 => 'subject_id', ), 'element_relationship_idx2' => array( 0 => 'type_id', ), 'element_relationship_idx3' => array( 0 => 'object_id', ), 'element_relationship_idx4' => array( 0 => 'value', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'element' => array( 'table' => 'element', 'columns' => array( 'subject_id' => 'element_id', 'object_id' => 'element_id', ), ), ), 'table' => 'element_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_elementresult | ( | ) |
Implements hook_chado_schema_v1_2_elementresult() Purpose: To describe the structure of 'elementresult' to tripal
.2
Definition at line 4078 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'elementresult_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'element_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'quantification_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'signal' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'elementresult_id', ), 'unique keys' => array( 'elementresult_c1' => array( 0 => 'element_id', 1 => 'quantification_id', ), ), 'indexes' => array( 'elementresult_idx1' => array( 0 => 'element_id', ), 'elementresult_idx2' => array( 0 => 'quantification_id', ), 'elementresult_idx3' => array( 0 => 'signal', ), ), 'foreign keys' => array( 'quantification' => array( 'table' => 'quantification', 'columns' => array( 'quantification_id' => 'quantification_id', ), ), 'element' => array( 'table' => 'element', 'columns' => array( 'element_id' => 'element_id', ), ), ), 'table' => 'elementresult', 'referring_tables' => array( 0 => 'elementresult_relationship', ), ); return $description; }
tripal_core_chado_schema_v1_2_elementresult_relationship | ( | ) |
Implements hook_chado_schema_v1_2_elementresult_relationship() Purpose: To describe the structure of 'elementresult_relationship' to tripal
.2
Definition at line 4158 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'elementresult_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'elementresult_relationship_id', ), 'unique keys' => array( 'elementresult_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'rank', ), ), 'indexes' => array( 'elementresult_relationship_idx1' => array( 0 => 'subject_id', ), 'elementresult_relationship_idx2' => array( 0 => 'type_id', ), 'elementresult_relationship_idx3' => array( 0 => 'object_id', ), 'elementresult_relationship_idx4' => array( 0 => 'value', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'elementresult' => array( 'table' => 'elementresult', 'columns' => array( 'subject_id' => 'elementresult_id', 'object_id' => 'elementresult_id', ), ), ), 'table' => 'elementresult_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_environment | ( | ) |
Implements hook_chado_schema_v1_2_environment() Purpose: To describe the structure of 'environment' to tripal
.2
Definition at line 4252 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'environment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'environment_id', ), 'unique keys' => array( 'environment_c1' => array( 0 => 'uniquename', ), ), 'indexes' => array( 'environment_idx1' => array( 0 => 'uniquename', ), ), 'foreign keys' => array( ), 'table' => 'environment', 'referring_tables' => array( 0 => 'environment_cvterm', 1 => 'phendesc', 2 => 'phenotype_comparison', 4 => 'phenstatement', ), ); return $description; }
tripal_core_chado_schema_v1_2_environment_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_environment_cvterm() Purpose: To describe the structure of 'environment_cvterm' to tripal
.2
Definition at line 4310 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'environment_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'environment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'environment_cvterm_id', ), 'unique keys' => array( 'environment_cvterm_c1' => array( 0 => 'environment_id', 1 => 'cvterm_id', ), ), 'indexes' => array( 'environment_cvterm_idx1' => array( 0 => 'environment_id', ), 'environment_cvterm_idx2' => array( 0 => 'cvterm_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'environment' => array( 'table' => 'environment', 'columns' => array( 'environment_id' => 'environment_id', ), ), ), 'table' => 'environment_cvterm', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_expression | ( | ) |
Implements hook_chado_schema_v1_2_expression() Purpose: To describe the structure of 'expression' to tripal
.2
Definition at line 4379 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'md5checksum' => array( 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'expression_id', ), 'unique keys' => array( 'expression_c1' => array( 0 => 'uniquename', ), ), 'foreign keys' => array( ), 'table' => 'expression', 'referring_tables' => array( 0 => 'expression_cvterm', 1 => 'expression_image', 2 => 'expression_pub', 3 => 'expressionprop', 4 => 'feature_expression', ), ); return $description; }
tripal_core_chado_schema_v1_2_expression_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_expression_cvterm() Purpose: To describe the structure of 'expression_cvterm' to tripal
.2
Definition at line 4439 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'cvterm_type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'expression_cvterm_id', ), 'unique keys' => array( 'expression_cvterm_c1' => array( 0 => 'expression_id', 1 => 'cvterm_id', 2 => 'cvterm_type_id', ), ), 'indexes' => array( 'expression_cvterm_idx1' => array( 0 => 'expression_id', ), 'expression_cvterm_idx2' => array( 0 => 'cvterm_id', ), 'expression_cvterm_idx3' => array( 0 => 'cvterm_type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', 'cvterm_type_id' => 'cvterm_id', ), ), 'expression' => array( 'table' => 'expression', 'columns' => array( 'expression_id' => 'expression_id', ), ), ), 'table' => 'expression_cvterm', 'referring_tables' => array( 0 => 'expression_cvtermprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_expression_cvtermprop | ( | ) |
Implements hook_chado_schema_v1_2_expression_cvtermprop() Purpose: To describe the structure of 'expression_cvtermprop' to tripal
.2
Definition at line 4526 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_cvtermprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'expression_cvtermprop_id', ), 'unique keys' => array( 'expression_cvtermprop_c1' => array( 0 => 'expression_cvterm_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'expression_cvtermprop_idx1' => array( 0 => 'expression_cvterm_id', ), 'expression_cvtermprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'expression_cvterm' => array( 'table' => 'expression_cvterm', 'columns' => array( 'expression_cvterm_id' => 'expression_cvterm_id', ), ), ), 'table' => 'expression_cvtermprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_expression_image | ( | ) |
Implements hook_chado_schema_v1_2_expression_image() Purpose: To describe the structure of 'expression_image' to tripal
.2
Definition at line 4607 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_image_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'eimage_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'expression_image_id', ), 'unique keys' => array( 'expression_image_c1' => array( 0 => 'expression_id', 1 => 'eimage_id', ), ), 'indexes' => array( 'expression_image_idx1' => array( 0 => 'expression_id', ), 'expression_image_idx2' => array( 0 => 'eimage_id', ), ), 'foreign keys' => array( 'expression' => array( 'table' => 'expression', 'columns' => array( 'expression_id' => 'expression_id', ), ), 'eimage' => array( 'table' => 'eimage', 'columns' => array( 'eimage_id' => 'eimage_id', ), ), ), 'table' => 'expression_image', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_expression_pub | ( | ) |
Implements hook_chado_schema_v1_2_expression_pub() Purpose: To describe the structure of 'expression_pub' to tripal
.2
Definition at line 4676 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expression_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'expression_pub_id', ), 'unique keys' => array( 'expression_pub_c1' => array( 0 => 'expression_id', 1 => 'pub_id', ), ), 'indexes' => array( 'expression_pub_idx1' => array( 0 => 'expression_id', ), 'expression_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'expression' => array( 'table' => 'expression', 'columns' => array( 'expression_id' => 'expression_id', ), ), ), 'table' => 'expression_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_expressionprop | ( | ) |
Implements hook_chado_schema_v1_2_expressionprop() Purpose: To describe the structure of 'expressionprop' to tripal
.2
Definition at line 4745 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'expressionprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'expressionprop_id', ), 'unique keys' => array( 'expressionprop_c1' => array( 0 => 'expression_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'expressionprop_idx1' => array( 0 => 'expression_id', ), 'expressionprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'expression' => array( 'table' => 'expression', 'columns' => array( 'expression_id' => 'expression_id', ), ), ), 'table' => 'expressionprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature | ( | ) |
Implements hook_chado_schema_v1_2_feature() Purpose: To describe the structure of 'feature' to tripal
.2
Definition at line 4826 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'residues' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'seqlen' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'md5checksum' => array( 'description' => 'TODO: please describe this field!', 'type' => 'char', 'length' => '32', 'not null' => FALSE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_analysis' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'is_obsolete' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'timeaccessioned' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), 'timelastmodified' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), ), 'primary key' => array( 0 => 'feature_id', ), 'unique keys' => array( 'feature_c1' => array( 0 => 'organism_id', 1 => 'uniquename', 2 => 'type_id', ), ), 'indexes' => array( 'feature_idx1' => array( 0 => 'dbxref_id', ), 'feature_idx2' => array( 0 => 'organism_id', ), 'feature_idx3' => array( 0 => 'type_id', ), 'feature_idx4' => array( 0 => 'uniquename', ), 'feature_name_ind1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'feature', 'referring_tables' => array( 0 => 'analysisfeature', 1 => 'cell_line_feature', 2 => 'element', 3 => 'feature_cvterm', 4 => 'feature_dbxref', 5 => 'feature_expression', 6 => 'feature_genotype', 8 => 'feature_phenotype', 9 => 'feature_pub', 10 => 'feature_relationship', 12 => 'feature_synonym', 13 => 'featureloc', 15 => 'featurepos', 17 => 'featureprop', 18 => 'featurerange', 23 => 'library_feature', 24 => 'phylonode', 25 => 'studyprop_feature', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_feature_cvterm() Purpose: To describe the structure of 'feature_cvterm' to tripal
.2
Definition at line 4986 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_not' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_cvterm_id', ), 'unique keys' => array( 'feature_cvterm_c1' => array( 0 => 'feature_id', 1 => 'cvterm_id', 2 => 'pub_id', 3 => 'rank', ), ), 'indexes' => array( 'feature_cvterm_idx1' => array( 0 => 'feature_id', ), 'feature_cvterm_idx2' => array( 0 => 'cvterm_id', ), 'feature_cvterm_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), ), 'table' => 'feature_cvterm', 'referring_tables' => array( 0 => 'feature_cvterm_dbxref', 1 => 'feature_cvterm_pub', 2 => 'feature_cvtermprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_cvterm_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_feature_cvterm_dbxref() Purpose: To describe the structure of 'feature_cvterm_dbxref' to tripal
.2
Definition at line 5087 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_cvterm_dbxref_id', ), 'unique keys' => array( 'feature_cvterm_dbxref_c1' => array( 0 => 'feature_cvterm_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'feature_cvterm_dbxref_idx1' => array( 0 => 'feature_cvterm_id', ), 'feature_cvterm_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'feature_cvterm' => array( 'table' => 'feature_cvterm', 'columns' => array( 'feature_cvterm_id' => 'feature_cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'feature_cvterm_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_cvterm_pub | ( | ) |
Implements hook_chado_schema_v1_2_feature_cvterm_pub() Purpose: To describe the structure of 'feature_cvterm_pub' to tripal
.2
Definition at line 5156 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvterm_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_cvterm_pub_id', ), 'unique keys' => array( 'feature_cvterm_pub_c1' => array( 0 => 'feature_cvterm_id', 1 => 'pub_id', ), ), 'indexes' => array( 'feature_cvterm_pub_idx1' => array( 0 => 'feature_cvterm_id', ), 'feature_cvterm_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'feature_cvterm' => array( 'table' => 'feature_cvterm', 'columns' => array( 'feature_cvterm_id' => 'feature_cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'feature_cvterm_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_cvtermprop | ( | ) |
Implements hook_chado_schema_v1_2_feature_cvtermprop() Purpose: To describe the structure of 'feature_cvtermprop' to tripal
.2
Definition at line 5225 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_cvtermprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_cvtermprop_id', ), 'unique keys' => array( 'feature_cvtermprop_c1' => array( 0 => 'feature_cvterm_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'feature_cvtermprop_idx1' => array( 0 => 'feature_cvterm_id', ), 'feature_cvtermprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature_cvterm' => array( 'table' => 'feature_cvterm', 'columns' => array( 'feature_cvterm_id' => 'feature_cvterm_id', ), ), ), 'table' => 'feature_cvtermprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_feature_dbxref() Purpose: To describe the structure of 'feature_dbxref' to tripal
.2
Definition at line 5306 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), ), 'primary key' => array( 0 => 'feature_dbxref_id', ), 'unique keys' => array( 'feature_dbxref_c1' => array( 0 => 'feature_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'feature_dbxref_idx1' => array( 0 => 'feature_id', ), 'feature_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), ), 'table' => 'feature_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_expression | ( | ) |
Implements hook_chado_schema_v1_2_feature_expression() Purpose: To describe the structure of 'feature_expression' to tripal
.2
Definition at line 5381 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_expression_id', ), 'unique keys' => array( 'feature_expression_c1' => array( 0 => 'expression_id', 1 => 'feature_id', 2 => 'pub_id', ), ), 'indexes' => array( 'feature_expression_idx1' => array( 0 => 'expression_id', ), 'feature_expression_idx2' => array( 0 => 'feature_id', ), 'feature_expression_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'expression' => array( 'table' => 'expression', 'columns' => array( 'expression_id' => 'expression_id', ), ), ), 'table' => 'feature_expression', 'referring_tables' => array( 0 => 'feature_expressionprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_expressionprop | ( | ) |
Implements hook_chado_schema_v1_2_feature_expressionprop() Purpose: To describe the structure of 'feature_expressionprop' to tripal
.2
Definition at line 5467 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_expressionprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_expression_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_expressionprop_id', ), 'unique keys' => array( 'feature_expressionprop_c1' => array( 0 => 'feature_expression_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'feature_expressionprop_idx1' => array( 0 => 'feature_expression_id', ), 'feature_expressionprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature_expression' => array( 'table' => 'feature_expression', 'columns' => array( 'feature_expression_id' => 'feature_expression_id', ), ), ), 'table' => 'feature_expressionprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_genotype | ( | ) |
Implements hook_chado_schema_v1_2_feature_genotype() Purpose: To describe the structure of 'feature_genotype' to tripal
.2
Definition at line 5548 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'chromosome_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cgroup' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_genotype_id', ), 'unique keys' => array( 'feature_genotype_c1' => array( 0 => 'feature_id', 1 => 'genotype_id', 2 => 'cvterm_id', 3 => 'chromosome_id', 4 => 'rank', 5 => 'cgroup', ), ), 'indexes' => array( 'feature_genotype_idx1' => array( 0 => 'feature_id', ), 'feature_genotype_idx2' => array( 0 => 'genotype_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', 'chromosome_id' => 'feature_id', ), ), 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), ), 'table' => 'feature_genotype', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_phenotype | ( | ) |
Implements hook_chado_schema_v1_2_feature_phenotype() Purpose: To describe the structure of 'feature_phenotype' to tripal
.2
Definition at line 5648 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_phenotype_id', ), 'unique keys' => array( 'feature_phenotype_c1' => array( 0 => 'feature_id', 1 => 'phenotype_id', ), ), 'indexes' => array( 'feature_phenotype_idx1' => array( 0 => 'feature_id', ), 'feature_phenotype_idx2' => array( 0 => 'phenotype_id', ), ), 'foreign keys' => array( 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'phenotype' => array( 'table' => 'phenotype', 'columns' => array( 'phenotype_id' => 'phenotype_id', ), ), ), 'table' => 'feature_phenotype', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_pub | ( | ) |
Implements hook_chado_schema_v1_2_feature_pub() Purpose: To describe the structure of 'feature_pub' to tripal
.2
Definition at line 5717 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_pub_id', ), 'unique keys' => array( 'feature_pub_c1' => array( 0 => 'feature_id', 1 => 'pub_id', ), ), 'indexes' => array( 'feature_pub_idx1' => array( 0 => 'feature_id', ), 'feature_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), ), 'table' => 'feature_pub', 'referring_tables' => array( 0 => 'feature_pubprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_pubprop | ( | ) |
Implements hook_chado_schema_v1_2_feature_pubprop() Purpose: To describe the structure of 'feature_pubprop' to tripal
.2
Definition at line 5788 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_pubprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_pubprop_id', ), 'unique keys' => array( 'feature_pubprop_c1' => array( 0 => 'feature_pub_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'feature_pubprop_idx1' => array( 0 => 'feature_pub_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature_pub' => array( 'table' => 'feature_pub', 'columns' => array( 'feature_pub_id' => 'feature_pub_id', ), ), ), 'table' => 'feature_pubprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_relationship | ( | ) |
Implements hook_chado_schema_v1_2_feature_relationship() Purpose: To describe the structure of 'feature_relationship' to tripal
.2
Definition at line 5866 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_relationship_id', ), 'unique keys' => array( 'feature_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'rank', ), ), 'indexes' => array( 'feature_relationship_idx1' => array( 0 => 'subject_id', ), 'feature_relationship_idx2' => array( 0 => 'object_id', ), 'feature_relationship_idx3' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'subject_id' => 'feature_id', 'object_id' => 'feature_id', ), ), ), 'table' => 'feature_relationship', 'referring_tables' => array( 0 => 'feature_relationship_pub', 1 => 'feature_relationshipprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_relationship_pub | ( | ) |
Implements hook_chado_schema_v1_2_feature_relationship_pub() Purpose: To describe the structure of 'feature_relationship_pub' to tripal
.2
Definition at line 5960 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationship_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_relationship_pub_id', ), 'unique keys' => array( 'feature_relationship_pub_c1' => array( 0 => 'feature_relationship_id', 1 => 'pub_id', ), ), 'indexes' => array( 'feature_relationship_pub_idx1' => array( 0 => 'feature_relationship_id', ), 'feature_relationship_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'feature_relationship' => array( 'table' => 'feature_relationship', 'columns' => array( 'feature_relationship_id' => 'feature_relationship_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'feature_relationship_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_relationshipprop | ( | ) |
Implements hook_chado_schema_v1_2_feature_relationshipprop() Purpose: To describe the structure of 'feature_relationshipprop' to tripal
.2
Definition at line 6029 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationshipprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'feature_relationshipprop_id', ), 'unique keys' => array( 'feature_relationshipprop_c1' => array( 0 => 'feature_relationship_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'feature_relationshipprop_idx1' => array( 0 => 'feature_relationship_id', ), 'feature_relationshipprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature_relationship' => array( 'table' => 'feature_relationship', 'columns' => array( 'feature_relationship_id' => 'feature_relationship_id', ), ), ), 'table' => 'feature_relationshipprop', 'referring_tables' => array( 0 => 'feature_relationshipprop_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_feature_relationshipprop_pub | ( | ) |
Implements hook_chado_schema_v1_2_feature_relationshipprop_pub() Purpose: To describe the structure of 'feature_relationshipprop_pub' to tripal
.2
Definition at line 6112 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_relationshipprop_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_relationshipprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'feature_relationshipprop_pub_id', ), 'unique keys' => array( 'feature_relationshipprop_pub_c1' => array( 0 => 'feature_relationshipprop_id', 1 => 'pub_id', ), ), 'indexes' => array( 'feature_relationshipprop_pub_idx1' => array( 0 => 'feature_relationshipprop_id', ), 'feature_relationshipprop_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'feature_relationshipprop' => array( 'table' => 'feature_relationshipprop', 'columns' => array( 'feature_relationshipprop_id' => 'feature_relationshipprop_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'feature_relationshipprop_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_feature_synonym | ( | ) |
Implements hook_chado_schema_v1_2_feature_synonym() Purpose: To describe the structure of 'feature_synonym' to tripal
.2
Definition at line 6182 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'feature_synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'is_internal' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), ), 'primary key' => array( 0 => 'feature_synonym_id', ), 'unique keys' => array( 'feature_synonym_c1' => array( 0 => 'synonym_id', 1 => 'feature_id', 2 => 'pub_id', ), ), 'indexes' => array( 'feature_synonym_idx1' => array( 0 => 'synonym_id', ), 'feature_synonym_idx2' => array( 0 => 'feature_id', ), 'feature_synonym_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'synonym' => array( 'table' => 'synonym', 'columns' => array( 'synonym_id' => 'synonym_id', ), ), ), 'table' => 'feature_synonym', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_featureloc | ( | ) |
Implements hook_chado_schema_v1_2_featureloc() Purpose: To describe the structure of 'featureloc' to tripal
.2
Definition at line 6278 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureloc_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'srcfeature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'fmin' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'is_fmin_partial' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'fmax' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'is_fmax_partial' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'strand' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'size' => 'small', 'not null' => FALSE, ), 'phase' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'residue_info' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'locgroup' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'featureloc_id', ), 'unique keys' => array( 'featureloc_c1' => array( 0 => 'feature_id', 1 => 'locgroup', 2 => 'rank', ), ), 'indexes' => array( 'binloc_boxrange' => array( 0 => 'fmin', ), 'binloc_boxrange_src' => array( 0 => 'srcfeature_id', 1 => 'fmin', ), 'featureloc_idx1' => array( 0 => 'feature_id', ), 'featureloc_idx2' => array( 0 => 'srcfeature_id', ), 'featureloc_idx3' => array( 0 => 'srcfeature_id', 1 => 'fmin', 2 => 'fmax', ), ), 'foreign keys' => array( 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', 'srcfeature_id' => 'feature_id', ), ), ), 'referring_tables' => array( 0 => 'featureloc_pub', ), 'table' => 'featureloc', ); return $description; }
tripal_core_chado_schema_v1_2_featureloc_pub | ( | ) |
Implements hook_chado_schema_v1_2_featureloc_pub() Purpose: To describe the structure of 'featureloc_pub' to tripal
.2
Definition at line 6407 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureloc_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'featureloc_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'featureloc_pub_id', ), 'unique keys' => array( 'featureloc_pub_c1' => array( 0 => 'featureloc_id', 1 => 'pub_id', ), ), 'indexes' => array( 'featureloc_pub_idx1' => array( 0 => 'featureloc_id', ), 'featureloc_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'featureloc' => array( 'table' => 'featureloc', 'columns' => array( 'featureloc_id' => 'featureloc_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'featureloc_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_featuremap | ( | ) |
Implements hook_chado_schema_v1_2_featuremap() Purpose: To describe the structure of 'featuremap' to tripal
.2
Definition at line 6476 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featuremap_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'unittype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'featuremap_id', ), 'unique keys' => array( 'featuremap_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'unittype_id' => 'cvterm_id', ), ), ), 'table' => 'featuremap', 'referring_tables' => array( 0 => 'featuremap_pub', 1 => 'featurepos', 2 => 'featurerange', ), ); return $description; }
tripal_core_chado_schema_v1_2_featuremap_pub | ( | ) |
Implements hook_chado_schema_v1_2_featuremap_pub() Purpose: To describe the structure of 'featuremap_pub' to tripal
.2
Definition at line 6540 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featuremap_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'featuremap_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'featuremap_pub_id', ), 'indexes' => array( 'featuremap_pub_idx1' => array( 0 => 'featuremap_id', ), 'featuremap_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'featuremap' => array( 'table' => 'featuremap', 'columns' => array( 'featuremap_id' => 'featuremap_id', ), ), ), 'table' => 'featuremap_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_featurepos | ( | ) |
Implements hook_chado_schema_v1_2_featurepos() Purpose: To describe the structure of 'featurepos' to tripal
.2
Definition at line 6603 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featurepos_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'featuremap_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'map_feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'mappos' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'featurepos_id', ), 'indexes' => array( 'featurepos_idx1' => array( 0 => 'featuremap_id', ), 'featurepos_idx2' => array( 0 => 'feature_id', ), 'featurepos_idx3' => array( 0 => 'map_feature_id', ), ), 'foreign keys' => array( 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', 'map_feature_id' => 'feature_id', ), ), 'featuremap' => array( 'table' => 'featuremap', 'columns' => array( 'featuremap_id' => 'featuremap_id', ), ), ), 'table' => 'featurepos', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_featureprop | ( | ) |
Implements hook_chado_schema_v1_2_featureprop() Purpose: To describe the structure of 'featureprop' to tripal
.2
Definition at line 6681 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'featureprop_id', ), 'unique keys' => array( 'featureprop_c1' => array( 0 => 'feature_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'featureprop_idx1' => array( 0 => 'feature_id', ), 'featureprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), ), 'table' => 'featureprop', 'referring_tables' => array( 0 => 'featureprop_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_featureprop_pub | ( | ) |
Implements hook_chado_schema_v1_2_featureprop_pub() Purpose: To describe the structure of 'featureprop_pub' to tripal
.2
Definition at line 6764 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featureprop_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'featureprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'featureprop_pub_id', ), 'unique keys' => array( 'featureprop_pub_c1' => array( 0 => 'featureprop_id', 1 => 'pub_id', ), ), 'indexes' => array( 'featureprop_pub_idx1' => array( 0 => 'featureprop_id', ), 'featureprop_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'featureprop' => array( 'table' => 'featureprop', 'columns' => array( 'featureprop_id' => 'featureprop_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'featureprop_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_featurerange | ( | ) |
Implements hook_chado_schema_v1_2_featurerange() Purpose: To describe the structure of 'featurerange' to tripal
.2
Definition at line 6833 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'featurerange_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'featuremap_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'leftstartf_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'leftendf_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'rightstartf_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'rightendf_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rangestr' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'featurerange_id', ), 'indexes' => array( 'featurerange_idx1' => array( 0 => 'featuremap_id', ), 'featurerange_idx2' => array( 0 => 'feature_id', ), 'featurerange_idx3' => array( 0 => 'leftstartf_id', ), 'featurerange_idx4' => array( 0 => 'leftendf_id', ), 'featurerange_idx5' => array( 0 => 'rightstartf_id', ), 'featurerange_idx6' => array( 0 => 'rightendf_id', ), ), 'foreign keys' => array( 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', 'leftstartf_id' => 'feature_id', 'leftendf_id' => 'feature_id', 'rightstartf_id' => 'feature_id', 'rightendf_id' => 'feature_id', ), ), 'featuremap' => array( 'table' => 'featuremap', 'columns' => array( 'featuremap_id' => 'featuremap_id', ), ), ), 'table' => 'featurerange', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_genotype | ( | ) |
Implements hook_chado_schema_v1_2_genotype() Purpose: To describe the structure of 'genotype' to tripal
.2
Definition at line 6938 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'genotype_id', ), 'unique keys' => array( 'genotype_c1' => array( 0 => 'uniquename', ), ), 'indexes' => array( 'genotype_idx1' => array( 0 => 'uniquename', ), 'genotype_idx2' => array( 0 => 'name', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'genotype', 'referring_tables' => array( 0 => 'feature_genotype', 1 => 'genotypeprop', 9 => 'nd_experiment_genotype', 10 => 'phendesc', 11 => 'phenotype_comparison', 13 => 'phenstatement', 14 => 'stock_genotype', ), ); return $description; }
tripal_core_chado_schema_v1_2_genotypeprop | ( | ) |
Implements hook_chado_schema_v1_2_genotypeprop() Purpose: To describe the structure of 'genotypeprop' to tripal
.2
Definition at line 7019 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'genotypeprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'genotypeprop_id', ), 'unique keys' => array( 'genotypeprop_c1' => array( 0 => 'genotype_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'genotypeprop_idx1' => array( 0 => 'genotype_id', ), 'genotypeprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), ), 'table' => 'genotypeprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_library | ( | ) |
Implements hook_chado_schema_v1_2_library() Purpose: To describe the structure of 'library' to tripal
.2
Definition at line 7100 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_obsolete' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'timeaccessioned' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), 'timelastmodified' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => TRUE, 'default' => 'ow(', ), ), 'primary key' => array( 0 => 'library_id', ), 'unique keys' => array( 'library_c1' => array( 0 => 'organism_id', 1 => 'uniquename', 2 => 'type_id', ), ), 'indexes' => array( 'library_idx1' => array( 0 => 'organism_id', ), 'library_idx2' => array( 0 => 'type_id', ), 'library_idx3' => array( 0 => 'uniquename', ), 'library_name_ind1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'referring_tables' => array( 0 => 'cell_line_library', 1 => 'library_cvterm', 2 => 'library_dbxref', 3 => 'library_feature', 4 => 'library_pub', 5 => 'library_synonym', 6 => 'libraryprop', ), 'table' => 'library', ); return $description; }
tripal_core_chado_schema_v1_2_library_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_library_cvterm() Purpose: To describe the structure of 'library_cvterm' to tripal
.2
Definition at line 7214 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'library_cvterm_id', ), 'unique keys' => array( 'library_cvterm_c1' => array( 0 => 'library_id', 1 => 'cvterm_id', 2 => 'pub_id', ), ), 'indexes' => array( 'library_cvterm_idx1' => array( 0 => 'library_id', ), 'library_cvterm_idx2' => array( 0 => 'cvterm_id', ), 'library_cvterm_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'library_cvterm', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_library_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_library_dbxref() Purpose: To describe the structure of 'library_dbxref' to tripal
.2
Definition at line 7298 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), ), 'primary key' => array( 0 => 'library_dbxref_id', ), 'unique keys' => array( 'library_dbxref_c1' => array( 0 => 'library_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'library_dbxref_idx1' => array( 0 => 'library_id', ), 'library_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'library_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_library_feature | ( | ) |
Implements hook_chado_schema_v1_2_library_feature() Purpose: To describe the structure of 'library_feature' to tripal
.2
Definition at line 7373 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'library_feature_id', ), 'unique keys' => array( 'library_feature_c1' => array( 0 => 'library_id', 1 => 'feature_id', ), ), 'indexes' => array( 'library_feature_idx1' => array( 0 => 'library_id', ), 'library_feature_idx2' => array( 0 => 'feature_id', ), ), 'foreign keys' => array( 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'library_feature', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_library_pub | ( | ) |
Implements hook_chado_schema_v1_2_library_pub() Purpose: To describe the structure of 'library_pub' to tripal
.2
Definition at line 7442 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'library_pub_id', ), 'unique keys' => array( 'library_pub_c1' => array( 0 => 'library_id', 1 => 'pub_id', ), ), 'indexes' => array( 'library_pub_idx1' => array( 0 => 'library_id', ), 'library_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'library_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_library_synonym | ( | ) |
Implements hook_chado_schema_v1_2_library_synonym() Purpose: To describe the structure of 'library_synonym' to tripal
.2
Definition at line 7512 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'library_synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), 'is_internal' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), ), 'primary key' => array( 0 => 'library_synonym_id', ), 'unique keys' => array( 'library_synonym_c1' => array( 0 => 'synonym_id', 1 => 'library_id', 2 => 'pub_id', ), ), 'indexes' => array( 'library_synonym_idx1' => array( 0 => 'synonym_id', ), 'library_synonym_idx2' => array( 0 => 'library_id', ), 'library_synonym_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'synonym' => array( 'table' => 'synonym', 'columns' => array( 'synonym_id' => 'synonym_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'library_synonym', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_libraryprop | ( | ) |
Implements hook_chado_schema_v1_2_libraryprop() Purpose: To describe the structure of 'libraryprop' to tripal
.2
Definition at line 7608 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'libraryprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'library_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'libraryprop_id', ), 'unique keys' => array( 'libraryprop_c1' => array( 0 => 'library_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'libraryprop_idx1' => array( 0 => 'library_id', ), 'libraryprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'library' => array( 'table' => 'library', 'columns' => array( 'library_id' => 'library_id', ), ), ), 'table' => 'libraryprop', 'referring_tables' => array( 0 => 'libraryprop_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_libraryprop_pub | ( | ) |
Implements hook_chado_schema_v1_2_libraryprop_pub() Purpose: To describe the structure of 'libraryprop_pub' to tripal
.2
Definition at line 7691 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'libraryprop_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'libraryprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'libraryprop_pub_id', ), 'unique keys' => array( 'libraryprop_pub_c1' => array( 0 => 'libraryprop_id', 1 => 'pub_id', ), ), 'indexes' => array( 'libraryprop_pub_idx1' => array( 0 => 'libraryprop_id', ), 'libraryprop_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'libraryprop' => array( 'table' => 'libraryprop', 'columns' => array( 'libraryprop_id' => 'libraryprop_id', ), ), ), 'table' => 'libraryprop_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_magedocumentation | ( | ) |
Implements hook_chado_schema_v1_2_magedocumentation() Purpose: To describe the structure of 'magedocumentation' to tripal
.2
Definition at line 7760 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'magedocumentation_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'mageml_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'tableinfo_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'row_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'mageidentifier' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'magedocumentation_id', ), 'indexes' => array( 'magedocumentation_idx1' => array( 0 => 'mageml_id', ), 'magedocumentation_idx2' => array( 0 => 'tableinfo_id', ), 'magedocumentation_idx3' => array( 0 => 'row_id', ), ), 'foreign keys' => array( 'tableinfo' => array( 'table' => 'tableinfo', 'columns' => array( 'tableinfo_id' => 'tableinfo_id', ), ), 'mageml' => array( 'table' => 'mageml', 'columns' => array( 'mageml_id' => 'mageml_id', ), ), ), 'table' => 'magedocumentation', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_mageml | ( | ) |
Implements hook_chado_schema_v1_2_mageml() Purpose: To describe the structure of 'mageml' to tripal
.2
Definition at line 7836 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'mageml_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'mage_package' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'mage_ml' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'mageml_id', ), 'foreign keys' => array( ), 'table' => 'mageml', 'referring_tables' => array( 0 => 'magedocumentation', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment() Purpose: To describe the structure of 'nd_experiment' to tripal
.2
Definition at line 7881 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_geolocation_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_geolocation' => array( 'table' => 'nd_geolocation', 'columns' => array( 'nd_geolocation_id' => 'nd_geolocation_id', ), ), ), 'table' => 'nd_experiment', 'referring_tables' => array( 0 => 'nd_experiment_contact', 1 => 'nd_experiment_dbxref', 2 => 'nd_experiment_genotype', 3 => 'nd_experiment_phenotype', 4 => 'nd_experiment_project', 5 => 'nd_experiment_protocol', 6 => 'nd_experiment_pub', 7 => 'nd_experiment_stock', 8 => 'nd_experimentprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_contact | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_contact() Purpose: To describe the structure of 'nd_experiment_contact' to tripal
.2
Definition at line 7946 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_contact_id', ), 'foreign keys' => array( 'contact' => array( 'table' => 'contact', 'columns' => array( 'contact_id' => 'contact_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_contact', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_dbxref() Purpose: To describe the structure of 'nd_experiment_dbxref' to tripal
.2
Definition at line 8001 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_dbxref_id', ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_genotype | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_genotype() Purpose: To describe the structure of 'nd_experiment_genotype' to tripal
.2
Definition at line 8056 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_genotype_id', ), 'unique keys' => array( 'nd_experiment_genotype_c1' => array( 0 => 'nd_experiment_id', 1 => 'genotype_id', ), ), 'foreign keys' => array( 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_genotype', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_phenotype | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_phenotype() Purpose: To describe the structure of 'nd_experiment_phenotype' to tripal
.2
Definition at line 8117 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_phenotype_id', ), 'unique keys' => array( 'nd_experiment_phenotype_c1' => array( 0 => 'nd_experiment_id', 1 => 'phenotype_id', ), ), 'foreign keys' => array( 'phenotype' => array( 'table' => 'phenotype', 'columns' => array( 'phenotype_id' => 'phenotype_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_phenotype', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_project | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_project() Purpose: To describe the structure of 'nd_experiment_project' to tripal
.2
Definition at line 8178 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_project_id', ), 'foreign keys' => array( 'project' => array( 'table' => 'project', 'columns' => array( 'project_id' => 'project_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_project', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_protocol | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_protocol() Purpose: To describe the structure of 'nd_experiment_protocol' to tripal
.2
Definition at line 8233 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'nd_protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_protocol_id', ), 'foreign keys' => array( 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), 'nd_protocol' => array( 'table' => 'nd_protocol', 'columns' => array( 'nd_protocol_id' => 'nd_protocol_id', ), ), ), 'table' => 'nd_experiment_protocol', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_pub | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_pub() Purpose: To describe the structure of 'nd_experiment_pub' to tripal
.2
Definition at line 8288 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_pub_id', ), 'unique keys' => array( 'nd_experiment_pub_c1' => array( 0 => 'nd_experiment_id', 1 => 'pub_id', ), ), 'indexes' => array( 'nd_experiment_pub_idx1' => array( 0 => 'nd_experiment_id', ), 'nd_experiment_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_stock | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_stock() Purpose: To describe the structure of 'nd_experiment_stock' to tripal
.2
Definition at line 8357 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_stock_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experiment_stock', 'referring_tables' => array( 0 => 'nd_experiment_stock_dbxref', 1 => 'nd_experiment_stockprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_stock_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_stock_dbxref() Purpose: To describe the structure of 'nd_experiment_stock_dbxref' to tripal
.2
Definition at line 8426 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_stock_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_experiment_stock_dbxref_id', ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'nd_experiment_stock' => array( 'table' => 'nd_experiment_stock', 'columns' => array( 'nd_experiment_stock_id' => 'nd_experiment_stock_id', ), ), ), 'table' => 'nd_experiment_stock_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experiment_stockprop | ( | ) |
Implements hook_chado_schema_v1_2_nd_experiment_stockprop() Purpose: To describe the structure of 'nd_experiment_stockprop' to tripal
.2
Definition at line 8481 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experiment_stockprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'nd_experiment_stockprop_id', ), 'unique keys' => array( 'nd_experiment_stockprop_c1' => array( 0 => 'nd_experiment_stock_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_experiment_stock' => array( 'table' => 'nd_experiment_stock', 'columns' => array( 'nd_experiment_stock_id' => 'nd_experiment_stock_id', ), ), ), 'table' => 'nd_experiment_stockprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_experimentprop | ( | ) |
Implements hook_chado_schema_v1_2_nd_experimentprop() Purpose: To describe the structure of 'nd_experimentprop' to tripal
.2
Definition at line 8554 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_experimentprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_experiment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'nd_experimentprop_id', ), 'unique keys' => array( 'nd_experimentprop_c1' => array( 0 => 'nd_experiment_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_experiment' => array( 'table' => 'nd_experiment', 'columns' => array( 'nd_experiment_id' => 'nd_experiment_id', ), ), ), 'table' => 'nd_experimentprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_geolocation | ( | ) |
Implements hook_chado_schema_v1_2_nd_geolocation() Purpose: To describe the structure of 'nd_geolocation' to tripal
.2
Definition at line 8627 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_geolocation_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'latitude' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'not null' => FALSE, ), 'longitude' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'not null' => FALSE, ), 'geodetic_datum' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '32', 'not null' => FALSE, ), 'altitude' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'nd_geolocation_id', ), 'foreign keys' => array( ), 'table' => 'nd_geolocation', 'referring_tables' => array( 0 => 'nd_experiment', 1 => 'nd_geolocationprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_geolocationprop | ( | ) |
Implements hook_chado_schema_v1_2_nd_geolocationprop() Purpose: To describe the structure of 'nd_geolocationprop' to tripal
.2
Definition at line 8690 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_geolocationprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_geolocation_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'nd_geolocationprop_id', ), 'unique keys' => array( 'nd_geolocationprop_c1' => array( 0 => 'nd_geolocation_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_geolocation' => array( 'table' => 'nd_geolocation', 'columns' => array( 'nd_geolocation_id' => 'nd_geolocation_id', ), ), ), 'table' => 'nd_geolocationprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_protocol | ( | ) |
Implements hook_chado_schema_v1_2_nd_protocol() Purpose: To describe the structure of 'nd_protocol' to tripal
.2
Definition at line 8763 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_protocol_id', ), 'unique keys' => array( 'name' => array( 0 => 'name', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'nd_protocol', 'referring_tables' => array( 0 => 'nd_experiment_protocol', 1 => 'nd_protocol_reagent', 2 => 'nd_protocolprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_protocol_reagent | ( | ) |
Implements hook_chado_schema_v1_2_nd_protocol_reagent() Purpose: To describe the structure of 'nd_protocol_reagent' to tripal
.2
Definition at line 8822 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_protocol_reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_protocol_reagent_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_protocol' => array( 'table' => 'nd_protocol', 'columns' => array( 'nd_protocol_id' => 'nd_protocol_id', ), ), 'nd_reagent' => array( 'table' => 'nd_reagent', 'columns' => array( 'reagent_id' => 'nd_reagent_id', ), ), ), 'table' => 'nd_protocol_reagent', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_protocolprop | ( | ) |
Implements hook_chado_schema_v1_2_nd_protocolprop() Purpose: To describe the structure of 'nd_protocolprop' to tripal
.2
Definition at line 8888 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_protocolprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'nd_protocolprop_id', ), 'unique keys' => array( 'nd_protocolprop_c1' => array( 0 => 'nd_protocol_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_protocol' => array( 'table' => 'nd_protocol', 'columns' => array( 'nd_protocol_id' => 'nd_protocol_id', ), ), ), 'table' => 'nd_protocolprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_reagent | ( | ) |
Implements hook_chado_schema_v1_2_nd_reagent() Purpose: To describe the structure of 'nd_reagent' to tripal
.2
Definition at line 8961 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '80', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'nd_reagent_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'nd_reagent', 'referring_tables' => array( 0 => 'nd_protocol_reagent', 1 => 'nd_reagent_relationship', 3 => 'nd_reagentprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_nd_reagent_relationship | ( | ) |
Implements hook_chado_schema_v1_2_nd_reagent_relationship() Purpose: To describe the structure of 'nd_reagent_relationship' to tripal
.2
Definition at line 9020 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_reagent_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'nd_reagent_relationship_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_reagent' => array( 'table' => 'nd_reagent', 'columns' => array( 'subject_reagent_id' => 'nd_reagent_id', 'object_reagent_id' => 'nd_reagent_id', ), ), ), 'table' => 'nd_reagent_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_nd_reagentprop | ( | ) |
Implements hook_chado_schema_v1_2_nd_reagentprop() Purpose: To describe the structure of 'nd_reagentprop' to tripal
.2
Definition at line 9081 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'nd_reagentprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'nd_reagent_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'nd_reagentprop_id', ), 'unique keys' => array( 'nd_reagentprop_c1' => array( 0 => 'nd_reagent_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'nd_reagent' => array( 'table' => 'nd_reagent', 'columns' => array( 'nd_reagent_id' => 'nd_reagent_id', ), ), ), 'table' => 'nd_reagentprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_organism | ( | ) |
Implements hook_chado_schema_v1_2_organism() Purpose: To describe the structure of 'organism' to tripal
.2
Definition at line 9154 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'abbreviation' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'genus' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'species' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'common_name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'comment' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'organism_id', ), 'unique keys' => array( 'organism_c1' => array( 0 => 'genus', 1 => 'species', ), ), 'foreign keys' => array( ), 'referring_tables' => array( 0 => 'biomaterial', 1 => 'cell_line', 2 => 'feature', 3 => 'library', 4 => 'organism_dbxref', 5 => 'organismprop', 6 => 'phenotype_comparison', 7 => 'phylonode_organism', 8 => 'stock', ), 'table' => 'organism', ); return $description; }
tripal_core_chado_schema_v1_2_organism_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_organism_dbxref() Purpose: To describe the structure of 'organism_dbxref' to tripal
.2
Definition at line 9232 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'organism_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'organism_dbxref_id', ), 'unique keys' => array( 'organism_dbxref_c1' => array( 0 => 'organism_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'organism_dbxref_idx1' => array( 0 => 'organism_id', ), 'organism_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'table' => 'organism_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_organismprop | ( | ) |
Implements hook_chado_schema_v1_2_organismprop() Purpose: To describe the structure of 'organismprop' to tripal
.2
Definition at line 9301 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'organismprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'organismprop_id', ), 'unique keys' => array( 'organismprop_c1' => array( 0 => 'organism_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'organismprop_idx1' => array( 0 => 'organism_id', ), 'organismprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'organismprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phendesc | ( | ) |
Implements hook_chado_schema_v1_2_phendesc() Purpose: To describe the structure of 'phendesc' to tripal
.2
Definition at line 9382 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phendesc_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'environment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phendesc_id', ), 'unique keys' => array( 'phendesc_c1' => array( 0 => 'genotype_id', 1 => 'environment_id', 2 => 'type_id', 3 => 'pub_id', ), ), 'indexes' => array( 'phendesc_idx1' => array( 0 => 'genotype_id', ), 'phendesc_idx2' => array( 0 => 'environment_id', ), 'phendesc_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), 'environment' => array( 'table' => 'environment', 'columns' => array( 'environment_id' => 'environment_id', ), ), ), 'table' => 'phendesc', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phenotype | ( | ) |
Implements hook_chado_schema_v1_2_phenotype() Purpose: To describe the structure of 'phenotype' to tripal
.2
Definition at line 9483 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'observable_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'attr_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'cvalue_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'phenotype_id', ), 'unique keys' => array( 'phenotype_c1' => array( 0 => 'uniquename', ), ), 'indexes' => array( 'phenotype_idx1' => array( 0 => 'cvalue_id', ), 'phenotype_idx2' => array( 0 => 'observable_id', ), 'phenotype_idx3' => array( 0 => 'attr_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'observable_id' => 'cvterm_id', 'attr_id' => 'cvterm_id', 'cvalue_id' => 'cvterm_id', 'assay_id' => 'cvterm_id', ), ), ), 'table' => 'phenotype', 'referring_tables' => array( 0 => 'feature_phenotype', 1 => 'nd_experiment_phenotype', 2 => 'phenotype_comparison', 4 => 'phenotype_cvterm', 5 => 'phenstatement', ), ); return $description; }
tripal_core_chado_schema_v1_2_phenotype_comparison | ( | ) |
Implements hook_chado_schema_v1_2_phenotype_comparison() Purpose: To describe the structure of 'phenotype_comparison' to tripal
.2
Definition at line 9582 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_comparison_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'genotype1_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'environment1_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'genotype2_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'environment2_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'phenotype1_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'phenotype2_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phenotype_comparison_id', ), 'unique keys' => array( 'phenotype_comparison_c1' => array( 0 => 'genotype1_id', 1 => 'environment1_id', 2 => 'genotype2_id', 3 => 'environment2_id', 4 => 'phenotype1_id', 5 => 'pub_id', ), ), 'indexes' => array( 'phenotype_comparison_idx1' => array( 0 => 'genotype1_id', ), 'phenotype_comparison_idx2' => array( 0 => 'genotype2_id', ), 'phenotype_comparison_idx4' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype1_id' => 'genotype_id', 'genotype2_id' => 'genotype_id', ), ), 'environment' => array( 'table' => 'environment', 'columns' => array( 'environment1_id' => 'environment_id', 'environment2_id' => 'environment_id', ), ), 'phenotype' => array( 'table' => 'phenotype', 'columns' => array( 'phenotype1_id' => 'phenotype_id', 'phenotype2_id' => 'phenotype_id', ), ), ), 'table' => 'phenotype_comparison', 'referring_tables' => array( 0 => 'phenotype_comparison_cvterm', ), ); return $description; }
tripal_core_chado_schema_v1_2_phenotype_comparison_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_phenotype_comparison_cvterm() Purpose: To describe the structure of 'phenotype_comparison_cvterm' to tripal
.2
Definition at line 9711 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_comparison_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phenotype_comparison_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'phenotype_comparison_cvterm_id', ), 'unique keys' => array( 'phenotype_comparison_cvterm_c1' => array( 0 => 'phenotype_comparison_id', 1 => 'cvterm_id', ), ), 'indexes' => array( 'phenotype_comparison_cvterm_idx1' => array( 0 => 'phenotype_comparison_id', ), 'phenotype_comparison_cvterm_idx2' => array( 0 => 'cvterm_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'phenotype_comparison' => array( 'table' => 'phenotype_comparison', 'columns' => array( 'phenotype_comparison_id' => 'phenotype_comparison_id', ), ), ), 'table' => 'phenotype_comparison_cvterm', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phenotype_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_phenotype_cvterm() Purpose: To describe the structure of 'phenotype_cvterm' to tripal
.2
Definition at line 9797 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenotype_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'phenotype_cvterm_id', ), 'unique keys' => array( 'phenotype_cvterm_c1' => array( 0 => 'phenotype_id', 1 => 'cvterm_id', 2 => 'rank', ), ), 'indexes' => array( 'phenotype_cvterm_idx1' => array( 0 => 'phenotype_id', ), 'phenotype_cvterm_idx2' => array( 0 => 'cvterm_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'phenotype' => array( 'table' => 'phenotype', 'columns' => array( 'phenotype_id' => 'phenotype_id', ), ), ), 'table' => 'phenotype_cvterm', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phenstatement | ( | ) |
Implements hook_chado_schema_v1_2_phenstatement() Purpose: To describe the structure of 'phenstatement' to tripal
.2
Definition at line 9873 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phenstatement_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'environment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'phenotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phenstatement_id', ), 'unique keys' => array( 'phenstatement_c1' => array( 0 => 'genotype_id', 1 => 'phenotype_id', 2 => 'environment_id', 3 => 'type_id', 4 => 'pub_id', ), ), 'indexes' => array( 'phenstatement_idx1' => array( 0 => 'genotype_id', ), 'phenstatement_idx2' => array( 0 => 'phenotype_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), 'environment' => array( 'table' => 'environment', 'columns' => array( 'environment_id' => 'environment_id', ), ), 'phenotype' => array( 'table' => 'phenotype', 'columns' => array( 'phenotype_id' => 'phenotype_id', ), ), ), 'table' => 'phenstatement', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylonode | ( | ) |
Implements hook_chado_schema_v1_2_phylonode() Purpose: To describe the structure of 'phylonode' to tripal
.2
Definition at line 9978 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylotree_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'parent_phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'left_idx' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'right_idx' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'label' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'distance' => array( 'description' => 'TODO: please describe this field!', 'type' => 'float', 'size' => 'big', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'phylonode_id', ), 'unique keys' => array( 'phylotree_id' => array( 0 => 'phylotree_id', 1 => 'left_idx', ), 'phylonode_phylotree_id_key1' => array( 0 => 'phylotree_id', 1 => 'right_idx', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'parent_phylonode_id' => 'phylonode_id', ), ), 'phylotree' => array( 'table' => 'phylotree', 'columns' => array( 'phylotree_id' => 'phylotree_id', ), ), ), 'table' => 'phylonode', 'referring_tables' => array( 0 => 'phylonode', 1 => 'phylonode_dbxref', 2 => 'phylonode_organism', 3 => 'phylonode_pub', 4 => 'phylonode_relationship', 6 => 'phylonodeprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_phylonode_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_phylonode_dbxref() Purpose: To describe the structure of 'phylonode_dbxref' to tripal
.2
Definition at line 10094 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phylonode_dbxref_id', ), 'unique keys' => array( 'phylonode_id' => array( 0 => 'phylonode_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'phylonode_dbxref_idx1' => array( 0 => 'phylonode_id', ), 'phylonode_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'phylonode_id' => 'phylonode_id', ), ), ), 'table' => 'phylonode_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylonode_organism | ( | ) |
Implements hook_chado_schema_v1_2_phylonode_organism() Purpose: To describe the structure of 'phylonode_organism' to tripal
.2
Definition at line 10163 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phylonode_organism_id', ), 'unique keys' => array( 'phylonode_id' => array( 0 => 'phylonode_id', ), ), 'indexes' => array( 'phylonode_organism_idx1' => array( 0 => 'phylonode_id', ), 'phylonode_organism_idx2' => array( 0 => 'organism_id', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'phylonode_id' => 'phylonode_id', ), ), ), 'table' => 'phylonode_organism', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylonode_pub | ( | ) |
Implements hook_chado_schema_v1_2_phylonode_pub() Purpose: To describe the structure of 'phylonode_pub' to tripal
.2
Definition at line 10231 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phylonode_pub_id', ), 'unique keys' => array( 'phylonode_id' => array( 0 => 'phylonode_id', 1 => 'pub_id', ), ), 'indexes' => array( 'phylonode_pub_idx1' => array( 0 => 'phylonode_id', ), 'phylonode_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'phylonode_id' => 'phylonode_id', ), ), ), 'table' => 'phylonode_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylonode_relationship | ( | ) |
Implements hook_chado_schema_v1_2_phylonode_relationship() Purpose: To describe the structure of 'phylonode_relationship' to tripal
.2
Definition at line 10300 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonode_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'phylotree_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phylonode_relationship_id', ), 'unique keys' => array( 'subject_id' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'phylonode_relationship_idx1' => array( 0 => 'subject_id', ), 'phylonode_relationship_idx2' => array( 0 => 'object_id', ), 'phylonode_relationship_idx3' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'subject_id' => 'phylonode_id', 'object_id' => 'phylonode_id', ), ), 'phylotree' => array( 'table' => 'phylotree', 'columns' => array( 'phylotree_id' => 'phylotree_id', ), ), ), 'table' => 'phylonode_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylonodeprop | ( | ) |
Implements hook_chado_schema_v1_2_phylonodeprop() Purpose: To describe the structure of 'phylonodeprop' to tripal
.2
Definition at line 10395 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylonodeprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylonode_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, 'default' => '', ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'phylonodeprop_id', ), 'unique keys' => array( 'phylonode_id' => array( 0 => 'phylonode_id', 1 => 'type_id', 2 => 'value', 3 => 'rank', ), ), 'indexes' => array( 'phylonodeprop_idx1' => array( 0 => 'phylonode_id', ), 'phylonodeprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'phylonode' => array( 'table' => 'phylonode', 'columns' => array( 'phylonode_id' => 'phylonode_id', ), ), ), 'table' => 'phylonodeprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_phylotree | ( | ) |
Implements hook_chado_schema_v1_2_phylotree() Purpose: To describe the structure of 'phylotree' to tripal
.2
Definition at line 10478 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylotree_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'analysis_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'comment' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'phylotree_id', ), 'indexes' => array( 'phylotree_idx1' => array( 0 => 'phylotree_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'analysis' => array( 'table' => 'analysis', 'columns' => array( 'analysis_id' => 'analysis_id', ), ), ), 'table' => 'phylotree', 'referring_tables' => array( 0 => 'phylonode', 1 => 'phylonode_relationship', 2 => 'phylotree_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_phylotree_pub | ( | ) |
Implements hook_chado_schema_v1_2_phylotree_pub() Purpose: To describe the structure of 'phylotree_pub' to tripal
.2
Definition at line 10564 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'phylotree_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'phylotree_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'phylotree_pub_id', ), 'unique keys' => array( 'phylotree_id' => array( 0 => 'phylotree_id', 1 => 'pub_id', ), ), 'indexes' => array( 'phylotree_pub_idx1' => array( 0 => 'phylotree_id', ), 'phylotree_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'phylotree' => array( 'table' => 'phylotree', 'columns' => array( 'phylotree_id' => 'phylotree_id', ), ), ), 'table' => 'phylotree_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_project | ( | ) |
Implements hook_chado_schema_v1_2_project() Purpose: To describe the structure of 'project' to tripal
.2
Definition at line 10633 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'project_id', ), 'unique keys' => array( 'project_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( ), 'table' => 'project', 'referring_tables' => array( 0 => 'assay_project', 1 => 'nd_experiment_project', 2 => 'project_contact', 10 => 'project_pub', 18 => 'project_relationship', 34 => 'projectprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_project_contact | ( | ) |
Implements hook_chado_schema_v1_2_project_contact() Purpose: To describe the structure of 'project_contact' to tripal
.2
Definition at line 10690 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'project_contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'project_contact_id', ), 'unique keys' => array( 'project_contact_c1' => array( 0 => 'project_id', 1 => 'contact_id', ), ), 'indexes' => array( 'project_contact_idx1' => array( 0 => 'project_id', ), 'project_contact_idx2' => array( 0 => 'contact_id', ), ), 'foreign keys' => array( 'contact' => array( 'table' => 'contact', 'columns' => array( 'contact_id' => 'contact_id', ), ), 'project' => array( 'table' => 'project', 'columns' => array( 'project_id' => 'project_id', ), ), ), 'table' => 'project_contact', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_project_pub | ( | ) |
Implements hook_chado_schema_v1_2_project_pub() Purpose: To describe the structure of 'project_pub' to tripal
.2
Definition at line 10759 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'project_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'project_pub_id', ), 'unique keys' => array( 'project_pub_c1' => array( 0 => 'project_id', 1 => 'pub_id', ), ), 'indexes' => array( 'project_pub_idx1' => array( 0 => 'project_id', ), 'project_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'project' => array( 'table' => 'project', 'columns' => array( 'project_id' => 'project_id', ), ), ), 'table' => 'project_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_project_relationship | ( | ) |
Implements hook_chado_schema_v1_2_project_relationship() Purpose: To describe the structure of 'project_relationship' to tripal
.2
Definition at line 10828 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'project_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'project_relationship_id', ), 'unique keys' => array( 'project_relationship_c1' => array( 0 => 'subject_project_id', 1 => 'object_project_id', 2 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'project' => array( 'table' => 'project', 'columns' => array( 'subject_project_id' => 'project_id', 'object_project_id' => 'project_id', ), ), ), 'table' => 'project_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_projectprop | ( | ) |
Implements hook_chado_schema_v1_2_projectprop() Purpose: To describe the structure of 'projectprop' to tripal
.2
Definition at line 10896 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'projectprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'project_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'projectprop_id', ), 'unique keys' => array( 'projectprop_c1' => array( 0 => 'project_id', 1 => 'type_id', 2 => 'rank', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'project' => array( 'table' => 'project', 'columns' => array( 'project_id' => 'project_id', ), ), ), 'table' => 'projectprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_protocol | ( | ) |
Implements hook_chado_schema_v1_2_protocol() Purpose: To describe the structure of 'protocol' to tripal
.2
Definition at line 10969 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'uri' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'protocoldescription' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'hardwaredescription' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'softwaredescription' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'protocol_id', ), 'unique keys' => array( 'protocol_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'protocol_idx1' => array( 0 => 'type_id', ), 'protocol_idx2' => array( 0 => 'pub_id', ), 'protocol_idx3' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'protocol', 'referring_tables' => array( 0 => 'acquisition', 1 => 'arraydesign', 2 => 'assay', 3 => 'protocolparam', 4 => 'quantification', 5 => 'treatment', ), ); return $description; }
tripal_core_chado_schema_v1_2_protocolparam | ( | ) |
Implements hook_chado_schema_v1_2_protocolparam() Purpose: To describe the structure of 'protocolparam' to tripal
.2
Definition at line 11083 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'protocolparam_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'datatype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'unittype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'protocolparam_id', ), 'indexes' => array( 'protocolparam_idx1' => array( 0 => 'protocol_id', ), 'protocolparam_idx2' => array( 0 => 'datatype_id', ), 'protocolparam_idx3' => array( 0 => 'unittype_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'datatype_id' => 'cvterm_id', 'unittype_id' => 'cvterm_id', ), ), 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), ), 'table' => 'protocolparam', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_pub | ( | ) |
Implements hook_chado_schema_v1_2_pub() Purpose: To describe the structure of 'pub' to tripal
.2
Definition at line 11171 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'title' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'volumetitle' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'volume' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'series_name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'issue' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'pyear' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'pages' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'miniref' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_obsolete' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => FALSE, 'default' => 'als', ), 'publisher' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'pubplace' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'pub_id', ), 'unique keys' => array( 'pub_c1' => array( 0 => 'uniquename', ), ), 'indexes' => array( 'pub_idx1' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'pub', 'referring_tables' => array( 0 => 'cell_line_cvterm', 1 => 'cell_line_feature', 2 => 'cell_line_library', 3 => 'cell_line_pub', 4 => 'cell_line_synonym', 5 => 'cell_lineprop_pub', 6 => 'expression_pub', 7 => 'feature_cvterm', 8 => 'feature_cvterm_pub', 9 => 'feature_expression', 10 => 'feature_pub', 11 => 'feature_relationship_pub', 12 => 'feature_relationshipprop_pub', 13 => 'feature_synonym', 14 => 'featureloc_pub', 15 => 'featuremap_pub', 16 => 'featureprop_pub', 17 => 'library_cvterm', 18 => 'library_pub', 19 => 'library_synonym', 20 => 'libraryprop_pub', 21 => 'nd_experiment_pub', 22 => 'phendesc', 23 => 'phenotype_comparison', 24 => 'phenotype_comparison_cvterm', 25 => 'phenstatement', 26 => 'phylonode_pub', 27 => 'phylotree_pub', 28 => 'project_pub', 36 => 'protocol', 37 => 'pub_dbxref', 38 => 'pub_relationship', 40 => 'pubauthor', 41 => 'pubprop', 42 => 'stock_cvterm', 43 => 'stock_pub', 44 => 'stock_relationship_cvterm', 52 => 'stock_relationship_pub', 53 => 'stockprop_pub', 54 => 'study', ), ); return $description; }
tripal_core_chado_schema_v1_2_pub_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_pub_dbxref() Purpose: To describe the structure of 'pub_dbxref' to tripal
.2
Definition at line 11335 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), ), 'primary key' => array( 0 => 'pub_dbxref_id', ), 'unique keys' => array( 'pub_dbxref_c1' => array( 0 => 'pub_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'pub_dbxref_idx1' => array( 0 => 'pub_id', ), 'pub_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'pub_dbxref', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_pub_relationship | ( | ) |
Implements hook_chado_schema_v1_2_pub_relationship() Purpose: To describe the structure of 'pub_relationship' to tripal
.2
Definition at line 11410 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'pub_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'pub_relationship_id', ), 'unique keys' => array( 'pub_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'pub_relationship_idx1' => array( 0 => 'subject_id', ), 'pub_relationship_idx2' => array( 0 => 'object_id', ), 'pub_relationship_idx3' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'subject_id' => 'pub_id', 'object_id' => 'pub_id', ), ), ), 'table' => 'pub_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_pubauthor | ( | ) |
Implements hook_chado_schema_v1_2_pubauthor() Purpose: To describe the structure of 'pubauthor' to tripal
.2
Definition at line 11489 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'pubauthor_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'editor' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => FALSE, 'default' => 'als', ), 'surname' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => TRUE, ), 'givennames' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => FALSE, ), 'suffix' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '100', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'pubauthor_id', ), 'unique keys' => array( 'pubauthor_c1' => array( 0 => 'pub_id', 1 => 'rank', ), ), 'indexes' => array( 'pubauthor_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'pubauthor', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_pubprop | ( | ) |
Implements hook_chado_schema_v1_2_pubprop() Purpose: To describe the structure of 'pubprop' to tripal
.2
Definition at line 11573 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'pubprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'pubprop_id', ), 'unique keys' => array( 'pubprop_c1' => array( 0 => 'pub_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'pubprop_idx1' => array( 0 => 'pub_id', ), 'pubprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), ), 'table' => 'pubprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_quantification | ( | ) |
Implements hook_chado_schema_v1_2_quantification() Purpose: To describe the structure of 'quantification' to tripal
.2
Definition at line 11653 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantification_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'acquisition_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'operator_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'analysis_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'quantificationdate' => array( 'description' => 'TODO: please describe this field!', 'type' => 'datetime', 'not null' => FALSE, 'default' => 'ow(', ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'uri' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'quantification_id', ), 'unique keys' => array( 'quantification_c1' => array( 0 => 'name', 1 => 'analysis_id', ), ), 'indexes' => array( 'quantification_idx1' => array( 0 => 'acquisition_id', ), 'quantification_idx2' => array( 0 => 'operator_id', ), 'quantification_idx3' => array( 0 => 'protocol_id', ), 'quantification_idx4' => array( 0 => 'analysis_id', ), ), 'foreign keys' => array( 'analysis' => array( 'table' => 'analysis', 'columns' => array( 'analysis_id' => 'analysis_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'operator_id' => 'contact_id', ), ), 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), 'acquisition' => array( 'table' => 'acquisition', 'columns' => array( 'acquisition_id' => 'acquisition_id', ), ), ), 'table' => 'quantification', 'referring_tables' => array( 0 => 'elementresult', 1 => 'quantification_relationship', 3 => 'quantificationprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_quantification_relationship | ( | ) |
Implements hook_chado_schema_v1_2_quantification_relationship() Purpose: To describe the structure of 'quantification_relationship' to tripal
.2
Definition at line 11770 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantification_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'quantification_relationship_id', ), 'unique keys' => array( 'quantification_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', ), ), 'indexes' => array( 'quantification_relationship_idx1' => array( 0 => 'subject_id', ), 'quantification_relationship_idx2' => array( 0 => 'type_id', ), 'quantification_relationship_idx3' => array( 0 => 'object_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'quantification' => array( 'table' => 'quantification', 'columns' => array( 'subject_id' => 'quantification_id', 'object_id' => 'quantification_id', ), ), ), 'table' => 'quantification_relationship', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_quantificationprop | ( | ) |
Implements hook_chado_schema_v1_2_quantificationprop() Purpose: To describe the structure of 'quantificationprop' to tripal
.2
Definition at line 11849 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'quantificationprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'quantification_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'quantificationprop_id', ), 'unique keys' => array( 'quantificationprop_c1' => array( 0 => 'quantification_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'quantificationprop_idx1' => array( 0 => 'quantification_id', ), 'quantificationprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'quantification' => array( 'table' => 'quantification', 'columns' => array( 'quantification_id' => 'quantification_id', ), ), ), 'table' => 'quantificationprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock | ( | ) |
Implements hook_chado_schema_v1_2_stock() Purpose: To describe the structure of 'stock' to tripal
.2
Definition at line 11930 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'Any stock can be globally identified by the combination of organism, uniquename and stock type. A stock is the physical entities, either living or preserved, held by collections. Stocks belong to a collection; they have IDs, type, organism, description and may have a genotype.', 'fields' => array( 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'organism_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_obsolete' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), ), 'primary key' => array( 0 => 'stock_id', ), 'unique keys' => array( 'stock_c1' => array( 0 => 'organism_id', 1 => 'uniquename', 2 => 'type_id', ), ), 'indexes' => array( 'stock_idx1' => array( 0 => 'dbxref_id', ), 'stock_idx2' => array( 0 => 'organism_id', ), 'stock_idx3' => array( 0 => 'type_id', ), 'stock_idx4' => array( 0 => 'uniquename', ), 'stock_name_ind1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'organism' => array( 'table' => 'organism', 'columns' => array( 'organism_id' => 'organism_id', ), ), 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), ), 'referring_tables' => array( 0 => 'nd_experiment_stock', 1 => 'stock_cvterm', 2 => 'stock_dbxref', 3 => 'stock_genotype', 4 => 'stock_pub', 5 => 'stock_relationship', 7 => 'stockcollection_stock', 8 => 'stockprop', ), 'table' => 'stock', ); return $description; }
tripal_core_chado_schema_v1_2_stock_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_stock_cvterm() Purpose: To describe the structure of 'stock_cvterm' to tripal
.2
Definition at line 12051 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_not' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'als', ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stock_cvterm_id', ), 'unique keys' => array( 'stock_cvterm_c1' => array( 0 => 'stock_id', 1 => 'cvterm_id', 2 => 'pub_id', 3 => 'rank', ), ), 'indexes' => array( 'stock_cvterm_idx1' => array( 0 => 'stock_id', ), 'stock_cvterm_idx2' => array( 0 => 'cvterm_id', ), 'stock_cvterm_idx3' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), ), 'table' => 'stock_cvterm', 'referring_tables' => array( 0 => 'stock_cvtermprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_stock_cvtermprop | ( | ) |
Implements hook_chado_schema_v1_2_stock_cvtermprop() Purpose: To describe the structure of 'stock_cvtermprop' to tripal
.2
Definition at line 12150 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_cvtermprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stock_cvtermprop_id', ), 'unique keys' => array( 'stock_cvtermprop_c1' => array( 0 => 'stock_cvterm_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'stock_cvtermprop_idx1' => array( 0 => 'stock_cvterm_id', ), 'stock_cvtermprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stock_cvterm' => array( 'table' => 'stock_cvterm', 'columns' => array( 'stock_cvterm_id' => 'stock_cvterm_id', ), ), ), 'table' => 'stock_cvtermprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock_dbxref | ( | ) |
Implements hook_chado_schema_v1_2_stock_dbxref() Purpose: To describe the structure of 'stock_dbxref' to tripal
.2
Definition at line 12231 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'is_current' => array( 'description' => 'TODO: please describe this field!', 'type' => 'boolean', 'not null' => TRUE, 'default' => 'ru', ), ), 'primary key' => array( 0 => 'stock_dbxref_id', ), 'unique keys' => array( 'stock_dbxref_c1' => array( 0 => 'stock_id', 1 => 'dbxref_id', ), ), 'indexes' => array( 'stock_dbxref_idx1' => array( 0 => 'stock_id', ), 'stock_dbxref_idx2' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), ), 'table' => 'stock_dbxref', 'referring_tables' => array( 0 => 'stock_dbxrefprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_stock_dbxrefprop | ( | ) |
Implements hook_chado_schema_v1_2_stock_dbxrefprop() Purpose: To describe the structure of 'stock_dbxrefprop' to tripal
.2
Definition at line 12308 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_dbxrefprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stock_dbxrefprop_id', ), 'unique keys' => array( 'stock_dbxrefprop_c1' => array( 0 => 'stock_dbxref_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'stock_dbxrefprop_idx1' => array( 0 => 'stock_dbxref_id', ), 'stock_dbxrefprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stock_dbxref' => array( 'table' => 'stock_dbxref', 'columns' => array( 'stock_dbxref_id' => 'stock_dbxref_id', ), ), ), 'table' => 'stock_dbxrefprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock_genotype | ( | ) |
Implements hook_chado_schema_v1_2_stock_genotype() Purpose: To describe the structure of 'stock_genotype' to tripal
.2
Definition at line 12389 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'genotype_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stock_genotype_id', ), 'unique keys' => array( 'stock_genotype_c1' => array( 0 => 'stock_id', 1 => 'genotype_id', ), ), 'indexes' => array( 'stock_genotype_idx1' => array( 0 => 'stock_id', ), 'stock_genotype_idx2' => array( 0 => 'genotype_id', ), ), 'foreign keys' => array( 'genotype' => array( 'table' => 'genotype', 'columns' => array( 'genotype_id' => 'genotype_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), ), 'table' => 'stock_genotype', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock_pub | ( | ) |
Implements hook_chado_schema_v1_2_stock_pub() Purpose: To describe the structure of 'stock_pub' to tripal
.2
Definition at line 12458 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stock_pub_id', ), 'unique keys' => array( 'stock_pub_c1' => array( 0 => 'stock_id', 1 => 'pub_id', ), ), 'indexes' => array( 'stock_pub_idx1' => array( 0 => 'stock_id', ), 'stock_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), ), 'table' => 'stock_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock_relationship | ( | ) |
Implements hook_chado_schema_v1_2_stock_relationship() Purpose: To describe the structure of 'stock_relationship' to tripal
.2
Definition at line 12527 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'subject_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'object_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stock_relationship_id', ), 'unique keys' => array( 'stock_relationship_c1' => array( 0 => 'subject_id', 1 => 'object_id', 2 => 'type_id', 3 => 'rank', ), ), 'indexes' => array( 'stock_relationship_idx1' => array( 0 => 'subject_id', ), 'stock_relationship_idx2' => array( 0 => 'object_id', ), 'stock_relationship_idx3' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'subject_id' => 'stock_id', 'object_id' => 'stock_id', ), ), ), 'table' => 'stock_relationship', 'referring_tables' => array( 0 => 'stock_relationship_cvterm', 8 => 'stock_relationship_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_stock_relationship_cvterm | ( | ) |
Implements hook_chado_schema_v1_2_stock_relationship_cvterm() Purpose: To describe the structure of 'stock_relationship_cvterm' to tripal
.2
Definition at line 12621 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_relationship_cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'cvterm_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'stock_relationship_cvterm_id', ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'cvterm_id' => 'cvterm_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'stock_relationship' => array( 'table' => 'stock_relationship', 'columns' => array( 'stock_relationship_id' => 'stock_relationship_id', ), ), ), 'table' => 'stock_relationship_cvterm', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stock_relationship_pub | ( | ) |
Implements hook_chado_schema_v1_2_stock_relationship_pub() Purpose: To describe the structure of 'stock_relationship_pub' to tripal
.2
Definition at line 12687 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stock_relationship_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_relationship_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stock_relationship_pub_id', ), 'unique keys' => array( 'stock_relationship_pub_c1' => array( 0 => 'stock_relationship_id', 1 => 'pub_id', ), ), 'indexes' => array( 'stock_relationship_pub_idx1' => array( 0 => 'stock_relationship_id', ), 'stock_relationship_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'stock_relationship' => array( 'table' => 'stock_relationship', 'columns' => array( 'stock_relationship_id' => 'stock_relationship_id', ), ), ), 'table' => 'stock_relationship_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stockcollection | ( | ) |
Implements hook_chado_schema_v1_2_stockcollection() Purpose: To describe the structure of 'stockcollection' to tripal
.2
Definition at line 12756 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollection_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => FALSE, ), 'uniquename' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stockcollection_id', ), 'unique keys' => array( 'stockcollection_c1' => array( 0 => 'uniquename', 1 => 'type_id', ), ), 'indexes' => array( 'stockcollection_idx1' => array( 0 => 'contact_id', ), 'stockcollection_idx2' => array( 0 => 'type_id', ), 'stockcollection_idx3' => array( 0 => 'uniquename', ), 'stockcollection_name_ind1' => array( 0 => 'name', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'contact_id' => 'contact_id', ), ), ), 'table' => 'stockcollection', 'referring_tables' => array( 0 => 'stockcollection_stock', 1 => 'stockcollectionprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_stockcollection_stock | ( | ) |
Implements hook_chado_schema_v1_2_stockcollection_stock() Purpose: To describe the structure of 'stockcollection_stock' to tripal
.2
Definition at line 12845 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollection_stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stockcollection_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stockcollection_stock_id', ), 'unique keys' => array( 'stockcollection_stock_c1' => array( 0 => 'stockcollection_id', 1 => 'stock_id', ), ), 'indexes' => array( 'stockcollection_stock_idx1' => array( 0 => 'stockcollection_id', ), 'stockcollection_stock_idx2' => array( 0 => 'stock_id', ), ), 'foreign keys' => array( 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), 'stockcollection' => array( 'table' => 'stockcollection', 'columns' => array( 'stockcollection_id' => 'stockcollection_id', ), ), ), 'table' => 'stockcollection_stock', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stockcollectionprop | ( | ) |
Implements hook_chado_schema_v1_2_stockcollectionprop() Purpose: To describe the structure of 'stockcollectionprop' to tripal
.2
Definition at line 12914 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockcollectionprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stockcollection_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stockcollectionprop_id', ), 'unique keys' => array( 'stockcollectionprop_c1' => array( 0 => 'stockcollection_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'stockcollectionprop_idx1' => array( 0 => 'stockcollection_id', ), 'stockcollectionprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stockcollection' => array( 'table' => 'stockcollection', 'columns' => array( 'stockcollection_id' => 'stockcollection_id', ), ), ), 'table' => 'stockcollectionprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_stockprop | ( | ) |
Implements hook_chado_schema_v1_2_stockprop() Purpose: To describe the structure of 'stockprop' to tripal
.2
Definition at line 12995 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stock_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'stockprop_id', ), 'unique keys' => array( 'stockprop_c1' => array( 0 => 'stock_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'stockprop_idx1' => array( 0 => 'stock_id', ), 'stockprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'stock' => array( 'table' => 'stock', 'columns' => array( 'stock_id' => 'stock_id', ), ), ), 'table' => 'stockprop', 'referring_tables' => array( 0 => 'stockprop_pub', ), ); return $description; }
tripal_core_chado_schema_v1_2_stockprop_pub | ( | ) |
Implements hook_chado_schema_v1_2_stockprop_pub() Purpose: To describe the structure of 'stockprop_pub' to tripal
.2
Definition at line 13078 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'stockprop_pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'stockprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'stockprop_pub_id', ), 'unique keys' => array( 'stockprop_pub_c1' => array( 0 => 'stockprop_id', 1 => 'pub_id', ), ), 'indexes' => array( 'stockprop_pub_idx1' => array( 0 => 'stockprop_id', ), 'stockprop_pub_idx2' => array( 0 => 'pub_id', ), ), 'foreign keys' => array( 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'stockprop' => array( 'table' => 'stockprop', 'columns' => array( 'stockprop_id' => 'stockprop_id', ), ), ), 'table' => 'stockprop_pub', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_study | ( | ) |
Implements hook_chado_schema_v1_2_study() Purpose: To describe the structure of 'study' to tripal
.2
Definition at line 13147 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'study_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'contact_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'pub_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'dbxref_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'study_id', ), 'unique keys' => array( 'study_c1' => array( 0 => 'name', ), ), 'indexes' => array( 'study_idx1' => array( 0 => 'contact_id', ), 'study_idx2' => array( 0 => 'pub_id', ), 'study_idx3' => array( 0 => 'dbxref_id', ), ), 'foreign keys' => array( 'dbxref' => array( 'table' => 'dbxref', 'columns' => array( 'dbxref_id' => 'dbxref_id', ), ), 'pub' => array( 'table' => 'pub', 'columns' => array( 'pub_id' => 'pub_id', ), ), 'contact' => array( 'table' => 'contact', 'columns' => array( 'contact_id' => 'contact_id', ), ), ), 'table' => 'study', 'referring_tables' => array( 0 => 'study_assay', 1 => 'studydesign', 2 => 'studyprop', ), ); return $description; }
tripal_core_chado_schema_v1_2_study_assay | ( | ) |
Implements hook_chado_schema_v1_2_study_assay() Purpose: To describe the structure of 'study_assay' to tripal
.2
Definition at line 13243 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'study_assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'study_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'study_assay_id', ), 'unique keys' => array( 'study_assay_c1' => array( 0 => 'study_id', 1 => 'assay_id', ), ), 'indexes' => array( 'study_assay_idx1' => array( 0 => 'study_id', ), 'study_assay_idx2' => array( 0 => 'assay_id', ), ), 'foreign keys' => array( 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), 'study' => array( 'table' => 'study', 'columns' => array( 'study_id' => 'study_id', ), ), ), 'table' => 'study_assay', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_studydesign | ( | ) |
Implements hook_chado_schema_v1_2_studydesign() Purpose: To describe the structure of 'studydesign' to tripal
.2
Definition at line 13312 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'study_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'studydesign_id', ), 'indexes' => array( 'studydesign_idx1' => array( 0 => 'study_id', ), ), 'foreign keys' => array( 'study' => array( 'table' => 'study', 'columns' => array( 'study_id' => 'study_id', ), ), ), 'table' => 'studydesign', 'referring_tables' => array( 0 => 'studydesignprop', 1 => 'studyfactor', ), ); return $description; }
tripal_core_chado_schema_v1_2_studydesignprop | ( | ) |
Implements hook_chado_schema_v1_2_studydesignprop() Purpose: To describe the structure of 'studydesignprop' to tripal
.2
Definition at line 13369 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studydesignprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'studydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'studydesignprop_id', ), 'unique keys' => array( 'studydesignprop_c1' => array( 0 => 'studydesign_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'studydesignprop_idx1' => array( 0 => 'studydesign_id', ), 'studydesignprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'studydesign' => array( 'table' => 'studydesign', 'columns' => array( 'studydesign_id' => 'studydesign_id', ), ), ), 'table' => 'studydesignprop', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_studyfactor | ( | ) |
Implements hook_chado_schema_v1_2_studyfactor() Purpose: To describe the structure of 'studyfactor' to tripal
.2
Definition at line 13450 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyfactor_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'studydesign_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => TRUE, ), 'description' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'studyfactor_id', ), 'indexes' => array( 'studyfactor_idx1' => array( 0 => 'studydesign_id', ), 'studyfactor_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'studydesign' => array( 'table' => 'studydesign', 'columns' => array( 'studydesign_id' => 'studydesign_id', ), ), ), 'table' => 'studyfactor', 'referring_tables' => array( 0 => 'studyfactorvalue', ), ); return $description; }
tripal_core_chado_schema_v1_2_studyfactorvalue | ( | ) |
Implements hook_chado_schema_v1_2_studyfactorvalue() Purpose: To describe the structure of 'studyfactorvalue' to tripal
.2
Definition at line 13525 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyfactorvalue_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'studyfactor_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'assay_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'factorvalue' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'studyfactorvalue_id', ), 'indexes' => array( 'studyfactorvalue_idx1' => array( 0 => 'studyfactor_id', ), 'studyfactorvalue_idx2' => array( 0 => 'assay_id', ), ), 'foreign keys' => array( 'assay' => array( 'table' => 'assay', 'columns' => array( 'assay_id' => 'assay_id', ), ), 'studyfactor' => array( 'table' => 'studyfactor', 'columns' => array( 'studyfactor_id' => 'studyfactor_id', ), ), ), 'table' => 'studyfactorvalue', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_studyprop | ( | ) |
Implements hook_chado_schema_v1_2_studyprop() Purpose: To describe the structure of 'studyprop' to tripal
.2
Definition at line 13604 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'study_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'value' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), ), 'primary key' => array( 0 => 'studyprop_id', ), 'unique keys' => array( 'study_id' => array( 0 => 'study_id', 1 => 'type_id', 2 => 'rank', ), ), 'indexes' => array( 'studyprop_idx1' => array( 0 => 'study_id', ), 'studyprop_idx2' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'study' => array( 'table' => 'study', 'columns' => array( 'study_id' => 'study_id', ), ), ), 'table' => 'studyprop', 'referring_tables' => array( 0 => 'studyprop_feature', ), ); return $description; }
tripal_core_chado_schema_v1_2_studyprop_feature | ( | ) |
Implements hook_chado_schema_v1_2_studyprop_feature() Purpose: To describe the structure of 'studyprop_feature' to tripal
.2
Definition at line 13687 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'studyprop_feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'studyprop_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'feature_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'studyprop_feature_id', ), 'unique keys' => array( 'studyprop_id' => array( 0 => 'studyprop_id', 1 => 'feature_id', ), ), 'indexes' => array( 'studyprop_feature_idx1' => array( 0 => 'studyprop_id', ), 'studyprop_feature_idx2' => array( 0 => 'feature_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'feature' => array( 'table' => 'feature', 'columns' => array( 'feature_id' => 'feature_id', ), ), 'studyprop' => array( 'table' => 'studyprop', 'columns' => array( 'studyprop_id' => 'studyprop_id', ), ), ), 'table' => 'studyprop_feature', 'referring_tables' => NULL, ); return $description; }
tripal_core_chado_schema_v1_2_synonym | ( | ) |
Implements hook_chado_schema_v1_2_synonym() Purpose: To describe the structure of 'synonym' to tripal
.2
Definition at line 13767 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'synonym_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'synonym_sgml' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '255', 'not null' => TRUE, ), ), 'primary key' => array( 0 => 'synonym_id', ), 'unique keys' => array( 'synonym_c1' => array( 0 => 'name', 1 => 'type_id', ), ), 'indexes' => array( 'synonym_idx1' => array( 0 => 'type_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), ), 'table' => 'synonym', 'referring_tables' => array( 0 => 'cell_line_synonym', 1 => 'feature_synonym', 2 => 'library_synonym', ), ); return $description; }
tripal_core_chado_schema_v1_2_tableinfo | ( | ) |
Implements hook_chado_schema_v1_2_tableinfo() Purpose: To describe the structure of 'tableinfo' to tripal
.2
Definition at line 13838 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'tableinfo_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '30', 'not null' => TRUE, ), 'primary_key_column' => array( 'description' => 'TODO: please describe this field!', 'type' => 'varchar', 'length' => '30', 'not null' => FALSE, ), 'is_view' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'view_on_table_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'superclass_table_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'is_updateable' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 1, ), 'modification_date' => array( 'description' => 'TODO: please describe this field!', 'type' => 'date', 'not null' => TRUE, 'default' => 'ow(', ), ), 'primary key' => array( 0 => 'tableinfo_id', ), 'unique keys' => array( 'tableinfo_c1' => array( 0 => 'name', ), ), 'foreign keys' => array( ), 'table' => 'tableinfo', 'referring_tables' => array( 0 => 'control', 1 => 'magedocumentation', ), ); return $description; }
tripal_core_chado_schema_v1_2_treatment | ( | ) |
Implements hook_chado_schema_v1_2_treatment() Purpose: To describe the structure of 'treatment' to tripal
.2
Definition at line 13919 of file tripal_core.schema_v1.2.api.inc.
{ $description = array( 'description' => 'TODO: please describe this table!', 'fields' => array( 'treatment_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'serial', 'not null' => TRUE, ), 'rank' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, 'default' => 0, ), 'biomaterial_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'type_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => TRUE, ), 'protocol_id' => array( 'description' => 'TODO: please describe this field!', 'type' => 'int', 'not null' => FALSE, ), 'name' => array( 'description' => 'TODO: please describe this field!', 'type' => 'text', 'not null' => FALSE, ), ), 'primary key' => array( 0 => 'treatment_id', ), 'indexes' => array( 'treatment_idx1' => array( 0 => 'biomaterial_id', ), 'treatment_idx2' => array( 0 => 'type_id', ), 'treatment_idx3' => array( 0 => 'protocol_id', ), ), 'foreign keys' => array( 'cvterm' => array( 'table' => 'cvterm', 'columns' => array( 'type_id' => 'cvterm_id', ), ), 'protocol' => array( 'table' => 'protocol', 'columns' => array( 'protocol_id' => 'protocol_id', ), ), 'biomaterial' => array( 'table' => 'biomaterial', 'columns' => array( 'biomaterial_id' => 'biomaterial_id', ), ), ), 'table' => 'treatment', 'referring_tables' => array( 0 => 'biomaterial_treatment', ), ); return $description; }