tripal_organism.api.inc File Reference

Go to the source code of this file.

Functions
	tripal_organism_get_organism_by_nid ($nid)
	tripal_organism_get_organism_by_organism_id ($organism_id)
	tripal_organism_get_synced ()

---

Detailed Description

Provides an application programming interface (API) to manage organisms

Definition in file tripal_organism.api.inc.

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Function Documentation

tripal_organism_get_organism_by_nid

(

$

nid

)

Purpose: Return a given organism object using the nid

Returns:

organism object created by node load

Definition at line 18 of file tripal_organism.api.inc.

                                                   {

  return node_load($nid);

}

tripal_organism_get_organism_by_organism_id

(

$

organism_id

)

Purpose: Return a given organism object using the organism id

Returns:

organism object created by node load

Definition at line 31 of file tripal_organism.api.inc.

                                                                   {

  $sql = "SELECT nid FROM {chado_organism} WHERE organism_id=%d";
  $r = db_fetch_object(db_query($sql, $organism_id));
  if (!empty($r->nid)) {
    return node_load($r->nid);
  }
  else {
    drupal_set_message(t("Function: tripal_organism_get_organism_by_organism_id() -no organism with that organism id sync'd with drupal"), 'error');
  }

  return 0;

}

tripal_organism_get_synced

(

)

Returns a list of organisms that are currently synced with Drupal

Definition at line 50 of file tripal_organism.api.inc.

                                      {

  // use this SQL for getting synced organisms
  $dsql =  "SELECT * FROM {chado_organism}";
  $orgs = db_query($dsql);

  // use this SQL statement for getting the organisms
  $csql =  "SELECT * FROM {Organism} ".
          "WHERE organism_id = %d";

  $org_list = array();

  // iterate through the organisms and build an array of those that are synced
  while ($org = db_fetch_object($orgs)) {
    $info = db_fetch_object(chado_query($csql, $org->organism_id));
    $org_list[] = $info;
  }
  return $org_list;
}