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Tripal v1.0 (6.x-1.0)
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Tripal v1.0 (6.x-1.0)
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Go to the source code of this file.
This file contains hooks for specifying the natural diversity tables when Chado v1.11 is installed. This is only useful for some specific sites that required the ND tables before they were released. These files should not be needed for most sites as the ND tables are now part of Chado v1.2. However these hooks remain here for backwards compatibility.
Definition in file tripal_natural_diversity.schema.inc.
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 23 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment',
'fields' => array(
'nd_experiment_id' => array(
'type' => 'serial',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_geolocation_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_id',
),
'foreign keys' => array(
'nd_geolocation' => array(
'table' => 'nd_geolocation',
'columns' => array(
'nd_geolocation_id' => 'nd_geolocation_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
'nd_experiment_contact',
'nd_experiment_dbxref',
'nd_experiment_genotype',
'nd_experiment_phenotype',
'nd_experiment_project',
'nd_experiment_protocol',
'nd_experiment_pub',
'nd_experiment_stock',
'nd_experimentprop'
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_contact | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 85 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_contact',
'fields' => array(
'nd_experiment_contact_id' => array(
'type' => 'serial',
'not null' => '1',
),
'contact_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_contact_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'contact' => array(
'table' => 'contact',
'columns' => array(
'contact_id' => 'contact_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_dbxref | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 139 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_dbxref',
'fields' => array(
'nd_experiment_dbxref_id' => array(
'type' => 'serial',
'not null' => '1',
),
'dbxref_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_dbxref_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_genotype | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 193 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_genotype',
'fields' => array(
'nd_experiment_genotype_id' => array(
'type' => 'serial',
'not null' => '1',
),
'genotype_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_genotype_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'genotype' => array(
'table' => 'genotype',
'columns' => array(
'genotype_id' => 'genotype_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_phenotype | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 247 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_phenotype',
'fields' => array(
'nd_experiment_phenotype_id' => array(
'type' => 'serial',
'not null' => '1',
),
'phenotype_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_phenotype_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'phenotype' => array(
'table' => 'phenotype',
'columns' => array(
'phenotype_id' => 'phenotype_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_project | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 301 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_project',
'fields' => array(
'nd_experiment_project_id' => array(
'type' => 'serial',
'not null' => '1',
),
'project_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_project_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'project' => array(
'table' => 'project',
'columns' => array(
'project_id' => 'project_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_protocol | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 355 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_protocol',
'fields' => array(
'nd_experiment_protocol_id' => array(
'type' => 'serial',
'not null' => '1',
),
'protocol_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_protocol_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'protocol' => array(
'table' => 'protocol',
'columns' => array(
'protocol_id' => 'protocol_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_pub | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 409 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_pub',
'fields' => array(
'nd_experiment_pub_id' => array(
'type' => 'serial',
'not null' => '1',
),
'pub_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_pub_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'pub' => array(
'table' => 'pub',
'columns' => array(
'pub_id' => 'pub_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stock | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 463 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_stock',
'fields' => array(
'nd_experiment_stock_id' => array(
'type' => 'serial',
'not null' => '1',
),
'stock_id' => array(
'type' => 'int',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_stock_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'stock' => array(
'table' => 'stock',
'columns' => array(
'stock_id' => 'stock_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
'nd_experiment_stock_dbxref',
'nd_experiment_stockprop',
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stock_dbxref | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 589 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_stock_dbxref',
'fields' => array(
'nd_experiment_stock_dbxref_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_experiment_stock_id' => array(
'type' => 'int',
'not null' => '1',
),
'dbxref_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_experiment_stock_dbxref_id',
),
'foreign keys' => array(
'nd_experiment_stock' => array(
'table' => 'nd_experiment_stock',
'columns' => array(
'nd_experiment_stock_id' => 'nd_experiment_stock_id',
),
),
'dbxref' => array(
'table' => 'dbxref',
'columns' => array(
'dbxref_id' => 'dbxref_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experiment_stockprop | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 528 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experiment_stockprop',
'fields' => array(
'nd_experiment_stockprop_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_experiment_stock_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'value' => array(
'type' => 'varchar',
),
'rank' => array(
'type' => 'int',
'not null' => 1,
'default' => 1
),
),
'primary key' => array(
'0' => 'nd_experiment_stockprop_id',
),
'foreign keys' => array(
'nd_experiment_stock' => array(
'table' => 'nd_experiment_stock',
'columns' => array(
'nd_experiment_stock_id' => 'nd_experiment_stock_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_experimentprop | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 643 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_experimentprop',
'fields' => array(
'nd_experimentprop_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_experiment_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'value' => array(
'type' => 'varchar',
),
'rank' => array(
'type' => 'int',
'not null' => 1,
'default' => 1
),
),
'primary key' => array(
'0' => 'nd_experimentprop_id',
),
'foreign keys' => array(
'nd_experiment' => array(
'table' => 'nd_experiment',
'columns' => array(
'nd_experiment_id' => 'nd_experiment_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_geolocation | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 704 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_reagent',
'fields' => array(
'nd_geolocation_id' => array(
'type' => 'serial',
'not null' => '1',
),
'description' => array(
'type' => 'varchar'
),
'latitude' => array(
'type' => 'real',
),
'longitude' => array(
'type' => 'real',
),
'altitude' => array(
'type' => 'real',
),
'geodetic_datum' => array(
'type' => 'varchar',
),
),
'primary key' => array(
'0' => 'nd_geolocation_id',
),
'referring_tables' => array(
'nd_experiment',
'nd_geolocationprop'
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_geolocationprop | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 752 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_geolocationprop',
'fields' => array(
'nd_geolocationprop_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_geolocation_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'value' => array(
'type' => 'varchar',
),
'rank' => array(
'type' => 'int',
'not null' => 1,
'default' => 1
),
),
'primary key' => array(
'0' => 'nd_geolocationprop_id',
),
'foreign keys' => array(
'nd_geolocation' => array(
'table' => 'nd_geolocation',
'columns' => array(
'nd_geolocation_id' => 'nd_geolocation_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_protocol | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 813 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_protocol',
'fields' => array(
'nd_protocol_id' => array(
'type' => 'serial',
'not null' => 1,
),
'name' => array(
'type' => 'varchar',
'not null' => 1,
),
),
'primary key' => array(
'0' => 'nd_protocol_id',
),
'referring_tables' => array(
'nd_experiment_protocol',
'nd_protocol_reagent',
'nd_protocolprop'
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_protocol_reagent | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 851 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_protocol_reagent',
'fields' => array(
'nd_protocol_reagent_id' => array(
'type' => 'serial',
'not null' => 1,
),
'nd_protocol_id' => array(
'type' => 'int',
'not null' => 1,
),
'nd_reagent_id' => array(
'type' => 'int',
'not null' => 1,
),
'type_id' => array(
'type' => 'int',
'not null' => 1,
),
),
'primary key' => array(
'0' => 'nd_protocol_reagent_id',
),
'foreign keys' => array(
'nd_protocol' => array(
'table' => 'nd_protocol',
'columns' => array(
'nd_protocol_id' => 'nd_protocol_id',
),
),
'nd_reagent' => array(
'table' => 'nd_reagent',
'columns' => array(
'nd_reagent_id' => 'nd_reagent_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_protocolprop | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 915 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_protocolprop',
'fields' => array(
'nd_protocolprop_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_protocol_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'value' => array(
'type' => 'varchar',
),
'rank' => array(
'type' => 'int',
'not null' => 1,
'default' => 1
),
),
'primary key' => array(
'0' => 'nd_protocolprop_id',
),
'foreign keys' => array(
'nd_protocol' => array(
'table' => 'nd_protocol',
'columns' => array(
'nd_protocol_id' => 'nd_protocol_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_reagent | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 976 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_reagent',
'fields' => array(
'nd_reagent_id' => array(
'type' => 'serial',
'not null' => '1',
),
'name' => array(
'type' => 'varchar',
'length' => 80,
'not null' => TRUE
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'feature_id' => array(
'type' => 'int',
),
),
'primary key' => array(
'0' => 'nd_reagent_id',
),
'foreign keys' => array(
'feature' => array(
'table' => 'feature',
'columns' => array(
'feature_id' => 'feature_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_reagent_relationship | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 1031 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_reagent_relationship',
'fields' => array(
'nd_reagent_relationship_id' => array(
'type' => 'serial',
'not null' => '1',
),
'subject_reagent_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'object_reagent_id' => array(
'type' => 'int',
'not null' => '1',
),
),
'primary key' => array(
'0' => 'nd_reagent_relationship_id',
),
'foreign keys' => array(
'nd_reagent' => array(
'table' => 'feature',
'columns' => array(
'subject_reagent_id' => 'nd_reagent_id',
'object_reagent_id' => 'nd_reagent_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
);
return $description;
}
| tripal_natural_diversity_chado_schema_v1_11_nd_reagentprop | ( | ) |
Implements hook_chado_schema_v1_11_table()
Purpose: To add descriptions and foreign keys to default table description Note: This array will be merged with the array from all other implementations
Definition at line 1087 of file tripal_natural_diversity.schema.inc.
{
$description = array();
$description = array(
'table' => 'nd_reagentprop',
'fields' => array(
'nd_reagentprop_id' => array(
'type' => 'serial',
'not null' => '1',
),
'nd_reagent_id' => array(
'type' => 'int',
'not null' => '1',
),
'type_id' => array(
'type' => 'int',
'not null' => '1',
),
'value' => array(
'type' => 'varchar',
),
'rank' => array(
'type' => 'int',
'not null' => 1,
'default' => 1
),
),
'primary key' => array(
'0' => 'nd_reagentprop_id',
),
'foreign keys' => array(
'nd_reagent' => array(
'table' => 'nd_reagent',
'columns' => array(
'nd_reagent_id' => 'nd_reagent_id',
),
),
'cvterm' => array(
'table' => 'cvterm',
'columns' => array(
'type_id' => 'cvterm_id',
),
),
),
'referring_tables' => array(
),
);
return $description;
}
1.7.4