Tripal at the Plant and Animal Genome XXIV Conference

Publication Date: 

1 year 3 months ago

Developers and users of Tripal held a codefest before PAG XXIV to discuss current and future Tripal developments. On the second day of PAG, the Tripal community hosted a workshop titled, Tripal Database Network and Initiatives.

Tripal Codefest - January 8, 2016

Codefest

 

Developers and users of Tripal met on January 8, 2016 to discuss current and future directions for Tripal modules and Tripal extension modules. For full proceedings and a list of attendees see the associated Google document.

Topics Discussed

  • ElasticSearch
  • Tripal3
  • Chado
  • Export of Data
  • NoSQL
  • Forums on Tripal.info
  • Expression Data
  • Comparative Map (CMap but more Tripal-y)
  • Tripal.info
  • Bulk Loader
  • Shopping Cart

Attendees

  • Ethy Cannon (Iowa State)
  • Ming Chen (University of Tennessee, Knoxville)
  • Connor Wytko (Washington State University)
  • Brian Soto (Washington State University)
  • Katheryn Buble (Washington State University)
  • Emily Grau (University of Connecticut)
  • Valentin Guignon (Biodiversity International)
  • Nate Henry (University of Tennessee, Knoxville)
  • Sook Jung (Washington State University)
  • Rob Moseley (University of Tennessee, Knoxville)
  • Lacey-Anne Sanderson (University of Saskatchewan)
  • Meg Staton (University of Tennessee, Knoxville)
  • Jill Wegrzyn (University of Connecticut)
  • Pooja Umale (National Center for Genome Resources, Santa Fe, NM)
  • Jacqueline D. Campbell (Iowa State University)
  • Taein Lee (Washington State University)
  • Sudhansu Dash (National Center for Genome Resources, Santa Fe, NM)
  • Gerard Lazo (USDA-ARS, Albany, CA)

Tripal Database Network and Initiatives - January 10, 2016

A Tripal workshop was hosted at the Plant and Animal Genome XXIV Conference. Talks were given by Tripal core developers, extension developers, and website administrators.

Organizers

Lacey-Anne Sanderson - University of Saskatechewan
Margaret Staton - University of Tennessee

Talks

Tripal v2: An Overview (abstract)
Speaker: Lacey-Anne Sanderson
Presentation

The Future of Tripal: intuitive content creation, flexible data storage and web services (abstract)
Speaker: Stephen P. Ficklin
Presentation

Overview of NRSP and Planned Tripal development (abstract)
Speaker: Dorrie Main

Extending Tripal to Manage Banana Genetic Resource Information (abstract)
Speaker: Valentin Guignon
Presentation

Efforts by the Hardwood Genomics Database team to extend Tripal functionality (abstract)
Speaker: Nate Henry
Presentation

TripalBIMS: the Breeding Information Management System in Tripal (abstract)
Speaker: Sook Jung
Presentation

CAMbase: a Resource for CAM Plant Genomics (abstract)
Speaker: Robert Clifford Moseley
Presentation

TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics (abstract)
Speaker: Emily Grau
Presentation

Posters

Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal (abstract)
Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Brian Soto, Connor Wytko, Alex Feltus, Sook Jung, Kirstin Bett, and Dorrie Main
Poster

Hardwood Genomics Database (HGD): a genomic and genetic web--database for hardwood trees research (abstract)
Chen M, Henry NL, Lane T, Cannon N, Coggeshall MV, Gailing O, Liang H, Romero-Severson J, Schlarbaum SE, Shumaker KL, Carlson JE, Staton ME
Poster

TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics
Emily Grau, Steven A. Demurjian, Hans Vasquez Gross, Damian Gessler, David Neale, Jill Wegrzyn
Poster