Meeting Date
Attendees
Lacey-Anne Sanderson (USASK)
Stephen Ficklin, Katheryn Buble (WSU)
Meg Staton (UTK)
Noah Caldwell (UTK)
Carolyn Caron (USASK)
Monica Poelchau (USDA-NAL)
Blake Inderski (USDA)
Reynold Tan (USASK)
Irene Cobo (UConn)
Jill Wegrzyn (UConn)
Valentin Guignon (Alliance Bioversity-CIAT)
Nic Herndon (ECU)
Sean Buehler (UTK)
Agenda
- HacktoberFest Wrap Up - how’d we do?
- PRs made to Core Tripal: 20
- Ferrisx4(1), michizhou(2), risharde(4), katherynbuble(1), spficklin(5), dsenalik(4), laceysanderson(2), bradfordcondon(1)
- PRs made to Tripal 4: 4 (plus two that haven’t been accepted yet)
- Ferrisx4(1), spficklin(1), laceysanderson(2)
- Don’t forget to fill out the form: https://forms.gle/Pp737HjruK9roCph8
- Only 3 so far: michizhou, dsenalik, laceysanderson
- Stephen and Rish need to fill out the form :)
- PRs made to Core Tripal: 20
- Tripal 4 Status & Call for Help
- You can check out our current task list here: https://github.com/tripal/t4d8/projects/1
- We are still behind schedule and urgently need help!
- Next Month's Meeting: Preparation for the annual Tripal Codefest
- We will be sending out a form requesting topics of interest
- We will organize into groups, with each group organizing their session with a combination of Slack/Zoom
- Hackathon will proceed Jan 11-15th
- We will hold a final get-together to review progress Friday 1/15.
- Coordinating with GMOD?
- White Paper Update
- Thanks Valentin for additions! (Val: you’re welcome ;) )
- Sending out soon. If you would still like to review let Meg know.
- Demonstration of AnalyzedPhenotypes & ND Genotypes by Carolyn Caron
- AnalyzedPhenotypes provides a researcher-friendly importer, violin plots and histograms, trait pages and integration on germplasm pages for phenotypic data. Additionally there is download functionality in R-friendly formats.
- For more info: https://github.com/uofs-pulse-binfo/analyzedphenotypes/
- ND Genotypes provides integration of large-scale genotypic data on sequence variant, genetic marker, germplasm and project pages. Additionally, there is a genotype matrix view with download capabilities.
- For more info: https://github.com/uofs-pulse-binfo/nd_genotypes/
- For import: https://github.com/uofs-pulse-binfo/genotypes_loader/
- These modules provide Tripal support for large-scale Genotypic and Phenotypic data in a proven generic manner with both modules having gold badge status! There is extensive configuration with sensible defaults to get you started quickly!
- AnalyzedPhenotypes provides a researcher-friendly importer, violin plots and histograms, trait pages and integration on germplasm pages for phenotypic data. Additionally there is download functionality in R-friendly formats.
Meeting Type