Tripal v1.0 (6.x-1.0)
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00001 00002 00003 <h3>Tripal Organism Administrative Tools Quick Links:</h3> 00004 <ul> 00005 <li><a href="<?php print url("admin/tripal/tripal_organism/configuration") ?>">Organism Configuration</a></li> 00006 </ul> 00007 00008 <h3>Module Description:</h3> 00009 <p>The Tripal Organism module allows you to add, edit and/or delete chado organisms. 00010 Furthermore, it also provides listing of organisms and details page for each organism. 00011 Basically, the chado organism module is designed to hold information about a given species. 00012 For more information on the chado organism module see the 00013 <a href="http://gmod.org/wiki/Chado_Organism_Module">GMOD wiki page</a></p> 00014 00015 <h3>Setup Instructions:</h3> 00016 <p>After installation of the organism module. The following tasks should be performed. 00017 <ol> 00018 <li><p><b>Set Permissions</b>: By default only the site administrator account has access to create, edit, delete 00019 or administer features. Navigate to the <?php print l('permissions page', 'admin/user/permissions')?> and set the 00020 permissions under the 'tripal_organism' section as appropriate for your site. For a simple setup, allow anonymous 00021 users access to view content and create a special role for creating, editing and other administrative tasks.</p></li> 00022 00023 <li><p><b>Create an Organism</b>: Organism pages can be created in two ways: 00024 <ol> 00025 <li><b>Sync Organisms</b>: If your organism has been pre-loaded into Chado then you need to sync the organism. 00026 This process is what creates the pages for viewing online. Not all organisms need be synced, only those 00027 that you want shown on the site. Use the the 00028 <a href="<?php print url('admin/tripal/tripal_organism/configuration') ?>">Organism Configuration page</a> 00029 to sync organisms. </li> 00030 <li><b>Manually Add An Organism</b>: If your organism is not already present in the Chado database 00031 you can create an organism using the <a href="<?php print url('node/add/chado-organism') ?>">Create Organism page</a>. 00032 Once saved, the organism will be present in Chado and also "synced". 00033 </ol></p></li> 00034 00035 </ol> 00036 00037 <h3>Features of this Module:</h3> 00038 <p>Aside from organism page setup (as described in the Setup section above), 00039 The Tripal organism module also provides the following functionality 00040 <ul> 00041 00042 <li><p><b>Simple Search Tool</b>: A <?php print l('simple search tool','chado/organisms') ?> is provided for 00043 finding organisms. This tool relies on Drupal Views. <a href="http://drupal.org/project/views">Drupal Views</a> 00044 which must be installed to see the search tool. Look for it in the navigation menu under the item 00045 "Search Biological Data". </p></li> 00046 </ul> 00047 </p>