Tripal v1.0 (6.x-1.0)
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00001 <h3>Tripal Feature Map Administrative Tools Quick Links:</h3> 00002 <ul> 00003 <li><a href="<?php print url('admin/tripal/tripal_featuremap/configuration') ?>">Map Configuration</a></li> 00004 </ul> 00005 00006 <h3>Module Description:</h3> 00007 <p>The Tripal Map module is an interface for the Chado Map module which groups features (sequences) into 00008 maps (typically genetic maps). 00009 This module provides support for visualization of "map" pages, editing and updating. 00010 </p> 00011 00012 <h3>Setup Instructions:</h3> 00013 <ol> 00014 <li><p><b>Set Permissions</b>: By default only the site administrator account has access to create, edit, delete 00015 or administer features. Navigate to the <?php print l('permissions page', 'admin/user/permissions')?> and set the 00016 permissions under the 'tripal_library' section as appropriate for your site. For a simple setup, allow anonymous 00017 users access to view content and create a special role for creating, editing and other administrative tasks.</p></li> 00018 00019 <li><p><b>Create a Map</b>: An map (called a feature map in Chado) can be <?php print l('created', 'node/add/chado-featuremap')?> 00020 manually in the same way any other data type. There is no loader for loading large files of map information including 00021 features that may be associated with these maps (e.g. genetic markers). The Tripal bulk loader is the only way 00022 to load this type of data.</p></li> 00023 00024 <li><p><b>Sync any Existing Maps</b>: Before Maps can be viewed on the website, they must first be <?php print l('created manually', 'node/add/chado-featuremap') ?> 00025 or if they already exist in the Chado database they must be synced. Near the top of the <?php print l('Map Configuration page', 'admin/tripal/tripal_featuremap/configuration') ?> 00026 there is 00027 a Sync Maps section which provides list of maps currently in chado which can be sync\'d. 00028 Simply select the maps you would like to create Drupal/Tripal pages for and click Sync Maps. Once synced, 00029 pages will appear on the site for maps.</p></li> 00030 00031 </ol> 00032 00033 00034 <h3>Features of this Module:</h3> 00035 <ul> 00036 <li><p><b>Edit or Delete Maps</b>: Maps can be manually edited or deleted by navigating to the map page and clicking the "Edit" button.</p></li> 00037 <li><p><b>Simple Search Tool</b>: A <?php print l('simple search tool','chado/featuremaps') ?> is provided for 00038 finding maps. This tool relies on Drupal Views. <a href="http://drupal.org/project/views">Drupal Views</a> 00039 which must be installed to see the search tool. Look for it in the navigation menu under the item 00040 "Search Biological Data". </p></li> 00041 </ul>