Tripal v1.0 (6.x-1.0)
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00001 00002 <h3>Tripal Analysis Administrative Tools Quick Links:</h3> 00003 <ul> 00004 <li><?php print l('Analysis Configuration', "admin/tripal/tripal_analysis/configuration") ?></li> 00005 </ul> 00006 00007 00008 <h3>Module Description:</h3> 00009 <p>The Tripal Analysis module provides a new analysis content type that is intended to be 00010 used when a more specialized analysis module does not exist. Because it is generic, it does not 00011 provide any visualization or data loading tools for analysis data. Specialized analysis modules, 00012 such as the Tripal Analysis Blast or Tripal Analysis KEGG modules provide loading and custom 00013 visualizations for the analysis results. These modules must be installed separately. 00014 </p> 00015 00016 <h3>Setup Instructions:</h3> 00017 <p>After installation of the analysis module or any specialized analysis module. The following tasks should be performed 00018 <ol> 00019 <li><p><b>Set Permissions</b>: By default only the site administrator account has access to create, edit, delete 00020 or administer analyses. Navigate to the <?php print l('permissions page', 'admin/user/permissions')?> and set the 00021 permissions under the 'tripal_analysis' section as appropriate for your site. For a simple setup, allow anonymous 00022 users access to view content and create a special role for creating, editing and other administrative tasks.</p></li> 00023 00024 00025 <li><p><b>Create an Analysis</b>: An analysis should be <?php print l('created', 'node/add/chado-analysis')?> before 00026 data is imported into chado. The generic analysis type should only be used when a more specialized analysis module 00027 (e.g. Tripal Analysis Blast module) does not already exists. All data imported into Chado should be associated with 00028 an analysis to help keep track of the source for data.</p></li> 00029 00030 <li><p><b>Sync Analyses</b>: If you have analyses already stored in Chado and would like to create pages for them, then 00031 analyses can be synced using the 00032 <?php print l('analysis configuration page', 'admin/tripal/tripal_analysis/configuration') ?>. The process of 'syncing' 00033 automatically creates the pages as if you had created them using the step above. 00034 </p></li> 00035 </ol> 00036 </p> 00037 00038 <h3>Additional Features of this Module:</h3> 00039 <ul> 00040 <li><p><b>Simple Search Tool</b>: A <?php print l('simple search tool','chado/analyses') ?> is provided for 00041 finding analyses. This tool relies on Drupal Views. <a href="http://drupal.org/project/views">Drupal Views</a> 00042 which must be installed to see the search tool. Look for it in the navigation menu under the item 00043 "Search Biological Data". </p></li> 00044 </ul> 00045 </p>