Functional Annotation Modules

For this tutorial we will be loading functional data for our gene. To do this we will use the Blast, KEGG, and InterPro extension modules. Those modules are available on the Extensions Page of the Tripal website. However, these extension modules are not part of Tripal but are available as separate extensions.  Anyone may create extensions for Tripal.  These extensions are useful for genomic data and therefore are included in this tutorial. 

drush pm-download tripal_analysis_blast
drush pm-download tripal_analysis_kegg
drush pm-download tripal_analysis_interpro

Now, enable these extension modules:

drush pm-enable tripal_analysis_blast
drush pm-enable tripal_analysis_interpro
drush pm-enable tripal_analysis_kegg

For this example, we will use the following files which are available for downloading:

Download these files to the /var/www/html/sites/default/files directory. To do so quickly run these commands:

cd /var/www/html/sites/default/files
wget http://www.gmod.org/mediawiki/images/0/0c/Citrus_sinensis-orange1.1g015632m.g.iprscan.xml
wget http://www.gmod.org/mediawiki/images/1/13/Citrus_sinensis-orange1.1g015632m.g.KEGG.heir.tar.gz
wget http://www.gmod.org/mediawiki/images/e/e8/Blastx_citrus_sinensis-orange1.1g015632m.g.fasta.0_vs_uniprot_sprot.fasta.out
wget http://www.gmod.org/mediawiki/images/2/24/Blastx_citrus_sinensis-orange1.1g015632m.g.fasta.0_vs_nr.out